Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0184 ATGAAGATTCAGTGTGATGTCTGTGAGAAAGCTCCTGCAACTGTGATGTGTTGTGCTGATGAAGCAGCTTTGTGTGCCAAATGTGATATAGAAGTTCATGCTGCAAACAGGCTAGCAAGCAAGCACCAGAGGCTTCTACTTCAATGTCCTTCAAACAAGCTTCCCAGATGTGACATATGCCAAGATAAGGCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTGTTCTGTAAGGATTGTGATGAAACAATTCATTCAGCCGACAGTCTTTCTTCGAACCACCAGCGCTTCCTAGCTACTGGTATCCGAGTGGCACTGAGTTCGAATTGCACTAAAGGTAATGAAAAAAGTCATTCGGAACCATCTAATGCAAATGCACAGCAAGTTCCGGTGAAAATTATGTCTCAGCAAGTGCCTACTAGCTTCACTTCCTCTTGGTCTGTTGATGACTTATTGGAATTAACAGACTTTGAATCACCAGACAAAAAGGATTCCCTGGAGTTTGGAGAGCTGGAATGGCTAGTAGATGAGGGTCTTTTTAGTGAACAATTTCCTCAGGAAGCGTTAGCTGCGGCCGAAGTTCCTCAACTTCCAGTAACACATACTAGCAGTGTTGCCTCATATAAAGGCTCTAAATCCTACAAAAAACCTAGGATTGAAGTCCTAGATGAAGATGATGATGAGCACTGCACTGTGCCTGATCTTGGCTAA 711 0.4318 MKIQCDVCEKAPATVMCCADEAALCAKCDIEVHAANRLASKHQRLLLQCPSNKLPRCDICQDKAAFIFCVEDRALFCKDCDETIHSADSLSSNHQRFLATGIRVALSSNCTKGNEKSHSEPSNANAQQVPVKIMSQQVPTSFTSSWSVDDLLELTDFESPDKKDSLEFGELEWLVDEGLFSEQFPQEALAAAEVPQLPVTHTSSVASYKGSKSYKKPRIEVLDEDDDEHCTVPDLG 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0184 236 CDD Bbox1_BBX-like 57 98 - -
Lal9g0184 236 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal9g0184 236 Gene3D Classic Zinc Finger 1 96 - -
Lal9g0184 236 MobiDBLite consensus disorder prediction 200 236 - -
Lal9g0184 236 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Lal9g0184 236 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 236 - -
Lal9g0184 236 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lal9g0184 236 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal9g0184 236 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 236 - -
Lal9g0184 236 CDD Bbox1_BBX-like 5 47 - -
Lal9g0184 236 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0184 Lal-Chr9 1144204 1149069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0184 1 162 Orphan Transcription Factor Family AT1G06040 66.071 2.64e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lal9g0184 zf-B_box 5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0184 - - gmx:100779183 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0174 2 1038706 1045638 Lal9g0184 9 1144204 1149069 LSH
Lal25g0366 25 2483533 2485975 Lal9g0184 9 1144204 1149069 PCT
Lal8g0308 8 2067235 2069726 Lal9g0184 9 1144204 1149069 PCT
Lal9g0184 9 1144204 1149069 Lal25g0366 25 2483533 2485975 PCT
Lal9g0184 9 1144204 1149069 Lal8g0308 8 2067235 2069726 PCT