Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0179 ATGGAAGATCCCTTTTTCCTTAAGGAAAAAGAATTTGGGTATTGGACATCTCCTCAGGCTCAATTGGAGGAGGGACCGCCATCGTTAGATGGTGGAACGAGAAGGTCAATTTCCGAGGATATGCTTAACAATTTCTCCGAGCTCATCAACTTTGATAATTATGCTGGTTGGTGCAATAGTCCTTTGATGAATGATCAGAGTTTGACCAATGGGCTTTCATCATTTGCCTCAGTACCATATCTACCACTCAGTGGATTCAATTTAGTGGAACAGAACAACAGCCCATTCTTTATGACAGAAGATAGTGGAAATTCTAATACTATGGACAACTCTAGTTATGGGGAGAAAGTTGTATTTCAGCCAATGGACACCCAACTTGGATTCTCAGATTATGCAAATGATACAAGTAACTTAGATTCAAACCAGAACTTCAATGGTTCATTTCAACAACTTAATACTTTAGATGTAAACAATTACATAATCTCCAAGCCATCTGGTTTATCGCTTGATGAGAGAATGCTGAGGGCTCTGTCTTTCTTTAAGGAATCAGCTGGTGAGGGAATATTAGCACAAGTTTGGGTTCCTAAAAAGCATGGTGATGAACTAATCTTAACCACGAGTGAGCAACCCTATCTGCTAGACCAAATGCTTGCAGGGTATCGTGAAGTGTCAAGGACATTCACATTTTCTGCAGAAAGAAAACCAGGTTCTTTTCCAGGGCTTCCTGGTCGGGTGTTTCTCTCCCAAGTTCCTGAATGGACCTCCCATATTGGTTACTACAATAAATCTGAGTACATGAGGGTGGAGGATGCGATTAATCATGACGTTCGTGGATCAATTGCTCTTCCCATATCCGATCTGCAGTCTGAATTGCCATGTTGTGCTGTACTTGAACTTGTCACTACAAAGGAAAAGCAAGATTTTGACAGAGAGTTAGAAATTGTTTCTCATGCACTTCAGCTTGTAAATTTAAGGACTACTATGCCTCCACGACTTCTTCCCCAGGTTTTGCTGGAACTTAAATGTCTATCAAATAACAAAAGAGCTGCTTTAACAGAGATAACTGACGTGTTACGAGCTGTGTGTCATGCACATAAATTGCCACTGGCACTGACATGGATTCCCTGTTGTTACAGCGAGGGAATGAGAGACGGAAGTGGGAGAGTACGAATTAAAGAGGGTGTTGCAAGTTCTGGTGAGAAATGCATACTATGCATTGAAGTATCAGCTTGCTATATAAATGATAGAGTGGTAGGAGGATTTGTTCATGCATGCGTTGAACATTATCTCGAGGAAGGGCAGGGTATAGCTGGGAAAGCTCTTCAATCAAACCTTCCATTCTTCTACCCTGATGTGAAGGCATGTGATATTGGTGAATATCCCCTTGTTCATCATGCACGCAAATATAATTTGAATGCTGCAGTCGCAATAAGGCTACGGAGTATTTATACTAACGATGATGATTACATATTGGAATTCTTCCTGCCTGTCGATATGTCTGGGAGTTCAGAACAACAACTTTTATTAGACAATCTCTCAGGTACTATGCAGAGAATTTGTAGGAATTTGAGGACTATTTCAGATGCTGAATTATCAGGAATCGAAGGGCCCCAAGTGGGGTTTGAAAATGAAAAGGTCCCATGTTTTTTTTCTATGTCTAGAGAAAATTCCCATTCAGCAATGCTAAATGGTGCCCATGATTCAGTCCAAAAAATGTCCTTGAAGGCATCTAACCTGAGAAACAATGGAATTGGAGCTGTTCATAACCAGGCAATAAATCGTTCAAGAAGACAGGCCGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATATTTTTCTGGTAGTCTTAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAGCATGGTATTTCCAGATGGCCATCCCGCAAGATAAATAAAGTGAATCGTTCATTGCAGAAAATACAGATTGTGCTTGATTCTGTGCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTCTACCGGGGGTTTTGTGGCAGGAGGGTCAATCATCCAAGCAATTGATGCACATAAAGGTCTTATGTTCCCTGAGAAATGGACTGTAAAAGACCCTGACTCTGTAACTAAAGATGCAGTCTCAGTACTTCCAGCATCTCGTAGTGAAGATGAGAGTTTGGTGATTAAGTTGGAGGAGGAGGATGTTTCTTTGGAGGGAAATCAGCTTCTGCACTCCAGAAGTGTGCTTATCTCCAATTCCTGTGATGGTGAAGTGAAGAAAGACAATGCCTTTTCTTTTGATTGTAATGATTATTCAAAATCAATGACAGTGGACAACGAATCCTACCGAACAACCTGCCCTTGGACCAAGTCTCAGGATTGTCCTGACCAAACCTATCCGGGTTCTGTTCTTGAAAAAGATACAGGGAGTTTGAATAAAAGTAGGCATGATATTGAGTGTCATAATTCAAGCTCTTTGGTTGCTGATGAGATGGAAATTGGTGGGGCTGTAGAACATAACCACCCGACTCCTTCAAGCATGACAGACTCATCTAGTGGCTCTGGCTCAACAATGCATGGCAGTTCTTCAAGCTCTCAGATATCTGAAAACCAGAAACAATCAAAACGCAAATCAACTTGTGTCGATAGTGAGTCAAAAATTATTGCGAAAGCTACCTATAGAGAAGATACTATTCGTTTCAAGTTTGATCCATCTATAGGTTGTTCACAGCTATATGCTGAAGTTGCAACAAGATTCAAATTACAAAATGGTTCATTCCAGCTCAAATATCTAGATGATGAAAAGGAATGGGTGATGCTGGTTAATGACTCAGATTTGCAAGAATGTGTTGAAATAATGGGTGATATCAACACACATAGTGTGAAGTTTATTGTTCGCGATATGTCTTGTGTTGTAAGCAACCCTGGCAATAACAGTTCCTTATTGGCAGCCAACTCAAAGTCATAG 2994 0.4081 MEDPFFLKEKEFGYWTSPQAQLEEGPPSLDGGTRRSISEDMLNNFSELINFDNYAGWCNSPLMNDQSLTNGLSSFASVPYLPLSGFNLVEQNNSPFFMTEDSGNSNTMDNSSYGEKVVFQPMDTQLGFSDYANDTSNLDSNQNFNGSFQQLNTLDVNNYIISKPSGLSLDERMLRALSFFKESAGEGILAQVWVPKKHGDELILTTSEQPYLLDQMLAGYREVSRTFTFSAERKPGSFPGLPGRVFLSQVPEWTSHIGYYNKSEYMRVEDAINHDVRGSIALPISDLQSELPCCAVLELVTTKEKQDFDRELEIVSHALQLVNLRTTMPPRLLPQVLLELKCLSNNKRAALTEITDVLRAVCHAHKLPLALTWIPCCYSEGMRDGSGRVRIKEGVASSGEKCILCIEVSACYINDRVVGGFVHACVEHYLEEGQGIAGKALQSNLPFFYPDVKACDIGEYPLVHHARKYNLNAAVAIRLRSIYTNDDDYILEFFLPVDMSGSSEQQLLLDNLSGTMQRICRNLRTISDAELSGIEGPQVGFENEKVPCFFSMSRENSHSAMLNGAHDSVQKMSLKASNLRNNGIGAVHNQAINRSRRQAEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLQKIQIVLDSVQGVEGGLKFDPSTGGFVAGGSIIQAIDAHKGLMFPEKWTVKDPDSVTKDAVSVLPASRSEDESLVIKLEEEDVSLEGNQLLHSRSVLISNSCDGEVKKDNAFSFDCNDYSKSMTVDNESYRTTCPWTKSQDCPDQTYPGSVLEKDTGSLNKSRHDIECHNSSSLVADEMEIGGAVEHNHPTPSSMTDSSSGSGSTMHGSSSSSQISENQKQSKRKSTCVDSESKIIAKATYREDTIRFKFDPSIGCSQLYAEVATRFKLQNGSFQLKYLDDEKEWVMLVNDSDLQECVEIMGDINTHSVKFIVRDMSCVVSNPGNNSSLLAANSKS 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0179 997 ProSiteProfiles PB1 domain profile. 895 977 IPR000270 GO:0005515
Lal9g0179 997 SUPERFAMILY CAD & PB1 domains 887 979 - -
Lal9g0179 997 Coils Coil 589 609 - -
Lal9g0179 997 Gene3D - 891 975 - -
Lal9g0179 997 ProSiteProfiles RWP-RK domain profile. 590 677 IPR003035 -
Lal9g0179 997 PANTHER PROTEIN NLP8 8 992 IPR045012 GO:0003700
Lal9g0179 997 MobiDBLite consensus disorder prediction 850 883 - -
Lal9g0179 997 MobiDBLite consensus disorder prediction 805 825 - -
Lal9g0179 997 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 8 992 - -
Lal9g0179 997 Pfam RWP-RK domain 609 657 IPR003035 -
Lal9g0179 997 Pfam PB1 domain 899 975 IPR000270 GO:0005515
Lal9g0179 997 MobiDBLite consensus disorder prediction 845 888 - -
Lal9g0179 997 SMART PB1_new 895 977 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0179 Lal-Chr9 1112466 1118396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0179 1 992 NLP Transcription Factor Family AT2G43500 47.913 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lal9g0179 PB1 9e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0179 - - aprc:113864503 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0179 9 1112466 1118396 Lal9g0179 9 1112466 1118396 ECH
Lal25g0354 25 2402774 2409895 Lal9g0179 9 1112466 1118396 PCT
Lal9g0179 9 1112466 1118396 Lal25g0354 25 2402774 2409895 PCT