Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0175 ATGCCGCACCCTTCTTTCTTCAAGCTTGTTCTACCCTCCACTCTCCAAGCCAATCAAATGAGGATTCCAGATAATTTTCTGAGTAAATATGGGGGTGAGCTTTCTGCAACTGCTAATCTATATGTTCCCGATGGTACTGTCTGGTACATAGGATTAAAAAATGCGGACAAAAAAATTTGGTTCCTCGATGGTTGGCCGGAATTTGTTCAACGCTATTCCGTTGGTGTTGGATACTTGTTAGTATTCAGATATGAAGGAAAGTCATCTTTCAATGTTCATATTTTTAATTTGGCTACTTCGGAGATAAACTATCAGTCAGCCACACAAAGCAGTACCGAAAGGCCATACTTCACAAATTGTCTTAAGTTTTTTGAAGAAATGGAAGATGAAGACTCTGTTGATTTCTTCAATTCACCTTCTTACATTACTCCTGGTTCTTTGCAAAACAAAGTTATTCCTGGATCAGTAGATATCAAACCTGGCAAGAGTAATAATACTCCCCCAGCATTGCAGAATCTATTTAATTGCTCGAAACTTAATAGCATAAACTGGGGCGAGGGTGAAGATACCCTTTCATCGAGAGGTGCTGGTTTACTAGACAGTCGGTTGACCCGGGGTATAGGTCTTCAGTTTAATGAAGTTGAGTTTAAAAGGTCTACTGAAGAATTGAAATTGTGTGCTTCTGTTGAGGAAAAGGTTATAAAACCTGTGAGAAAGAAGCGGAAATCAGAAGGCCAGGAACCCTCTGCTGAACATGAAGAGGAGACAGAAATGCGCAACAGATTTTATGAAAGTGCTTCTGCGAGAAAAAGAACTGTGACAACAGAAGAAAGAGAACGGGCGATCAATGCAGCAAAAGCATTTGAACCAGATAATCCTTTTTGCCGGTATTTGCCATCATGCTTTGCAGAAAAACATTTGAATGGGGTTTCAGGATTTATTAAACTTCAAAACTCAGATGGGAGACAGTGGCTGGTTCGGTGCCTTTATAAGGGTGGTAGAGCTAAGTTTAGCCAAGGGTGGTTTGAATTTACATTAGAGAACAATATAGGGGAAGGTGATGTTTGTGTGTTTGAGCTGCTTACAATGAAGGAGGTAGTGCTCAAAGTTACTGTATTTCATGTCATTGAGGATGTTGGTTTGTTGAGCCCTCCTTTGCAGCAGAACCAAAATCTGAGCTCACCTAAACTGATGAACACTCTCTTGCAGCATCACCTCACTCCAGTTAAACTTGCTAGAAACTAG 1245 0.4048 MPHPSFFKLVLPSTLQANQMRIPDNFLSKYGGELSATANLYVPDGTVWYIGLKNADKKIWFLDGWPEFVQRYSVGVGYLLVFRYEGKSSFNVHIFNLATSEINYQSATQSSTERPYFTNCLKFFEEMEDEDSVDFFNSPSYITPGSLQNKVIPGSVDIKPGKSNNTPPALQNLFNCSKLNSINWGEGEDTLSSRGAGLLDSRLTRGIGLQFNEVEFKRSTEELKLCASVEEKVIKPVRKKRKSEGQEPSAEHEEETEMRNRFYESASARKRTVTTEERERAINAAKAFEPDNPFCRYLPSCFAEKHLNGVSGFIKLQNSDGRQWLVRCLYKGGRAKFSQGWFEFTLENNIGEGDVCVFELLTMKEVVLKVTVFHVIEDVGLLSPPLQQNQNLSSPKLMNTLLQHHLTPVKLARN 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0175 414 CDD B3_DNA 294 373 IPR003340 GO:0003677
Lal9g0175 414 ProSiteProfiles B3 DNA-binding domain profile. 298 376 IPR003340 GO:0003677
Lal9g0175 414 SUPERFAMILY DNA-binding pseudobarrel domain 295 374 IPR015300 -
Lal9g0175 414 PANTHER B3 DOMAIN-CONTAINING 1 404 - -
Lal9g0175 414 MobiDBLite consensus disorder prediction 237 260 - -
Lal9g0175 414 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 404 - -
Lal9g0175 414 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Lal9g0175 414 Pfam B3 DNA binding domain 296 373 IPR003340 GO:0003677
Lal9g0175 414 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Lal9g0175 414 Gene3D - 1 98 IPR015300 -
Lal9g0175 414 SMART B3_2 6 98 IPR003340 GO:0003677
Lal9g0175 414 SMART B3_2 284 376 IPR003340 GO:0003677
Lal9g0175 414 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Lal9g0175 414 CDD B3_DNA 4 96 IPR003340 GO:0003677
Lal9g0175 414 Gene3D - 272 378 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0175 Lal-Chr9 1088667 1091476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0175 1 380 B3 DNA Binding Superfamily AT3G18990 45.771 1.85e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal9g0175 B3 1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0175 - - gmx:100813285 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0175 9 1088667 1091476 Lal9g0175 9 1088667 1091476 ECH
Lal1g0269 1 1578917 1582280 Lal9g0175 9 1088667 1091476 LSH