Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0172 ATGGATGATTACGTCATCAGCGACGACGATTACCAATACTCGGACGATCAAGATGACTCCGTCGAAGCTTACGAAAACGATGAAACCGATTATCAGTTGGTTACTTCAAAGGGCCCATCTACTCAGGTGATTACGAAAGAGTCACTGCTAGCTGCACAGAGGGAGGATTTGCGCCGGGTGATGGACATGCTATCAGTGAAAGAGCAACATGCACGGACCCTGCTTATTTATCATTGTTGGGATGTGGAGAAGTTGTTTGCAGTATACGTGGACAAAGGGATAGCATATCTCTTTGCTGAAGCTGGTGTTACTATGGATAAACATCATCGATCTGACTCGTCAGTCCACTCTTTAATAATGTGTGAAATCTGTATGGAGGATGTTCCTATTGATGAAGCAACAGGAATGGACTGTGGTCACTGTTTTTGCAACACATGTTGGACGGAGCATTTTATTGTCAAGATAAACGAGGGCCAAAGTAAACGCATTAGATGCATGGCTCATAAATGTTATTCCATTTGCGATGAAGCTGTTGTAAGAACTCTGCTTGGTAGAAAGCACCCTGATATGGCCGAGAAATATGAACGCTTTCTTCTTGAATCCTACATCGAAGACAACAAAAGAGTTAAATGGTGTCCTAGCACGCCTCATTGTGGGAATGCAATACGTGTTGAGGATGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGTTTTAGTTGCCTGTCCGAAACACACTCCCCGTGTTCATGTGTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATGACAGTTCATACAAAACCTTGCCCAAAGTGCCACAAGCCAGTGGAGAAGAATGGTGGATGTAACTTGGTTAGCTGTATCTGTGGCCAACCATTTTGTTGGGTGTGTGGTGGAGCCACTGGCCGAAATCATACTTGGTCAAGTATAGCAGGTCATAGCTGTGGTCGCTACAAAGACCAAGAAAAATCAGCTGAACGAGCAAAGCGGGACCTATATCGTTATATGCACTATCATAACCGTTACAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGAGACTATACAAGGAAAGATTGATATTTCAGAAGAAAAAGATTCTAAACTCAGAGATTATAGCTGGGTAATTAATGGTCTCTCCAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAACTTTTTAAGGATGAAATGTCAGAAGCTCAAAGGGAAATAAAACAGAACTTATTCGAGGATCAACAGCAACAGCTTGAGGCAAATGTTGAAAAGATCTCTAAAATTTTGGAGGAGCCTTTTGATACCTTCCCCGATGATAAGGTTATGGAAATAAGAATGCAGATAATCAATCTGTCGGCAGTTATTGACAAACTTTGTCAAAAAATGTATGACTGCATTGAGAATGATTTGTTGGGTTCTCTCCATCAAACTCATAACATAGCTCCATACAAGTCAAAGGGCATAGAGAAGGCATCAGAACTATCAGTTTGGAGCAATAAAGCTAATAATACTGGTAGAATAGCAGAAGTTGATCGGCCTTCTGGATCAGGGAGCTCAGATGACCATGAATGTTCTTCTCATAAGCGTGCTAGAAAAGAAAGTGTTGGAAGTGGTGGTGGTGGGTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1746 0.4112 MDDYVISDDDYQYSDDQDDSVEAYENDETDYQLVTSKGPSTQVITKESLLAAQREDLRRVMDMLSVKEQHARTLLIYHCWDVEKLFAVYVDKGIAYLFAEAGVTMDKHHRSDSSVHSLIMCEICMEDVPIDEATGMDCGHCFCNTCWTEHFIVKINEGQSKRIRCMAHKCYSICDEAVVRTLLGRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFSCLSETHSPCSCVMWELWAKKCRDESETVNWMTVHTKPCPKCHKPVEKNGGCNLVSCICGQPFCWVCGGATGRNHTWSSIAGHSCGRYKDQEKSAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQGKIDISEEKDSKLRDYSWVINGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMSEAQREIKQNLFEDQQQQLEANVEKISKILEEPFDTFPDDKVMEIRMQIINLSAVIDKLCQKMYDCIENDLLGSLHQTHNIAPYKSKGIEKASELSVWSNKANNTGRIAEVDRPSGSGSSDDHECSSHKRARKESVGSGGGGFFDLNLPAEFVDRN 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0172 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 207 IPR013083 -
Lal9g0172 581 SUPERFAMILY RING/U-box 192 260 - -
Lal9g0172 581 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 515 IPR031127 GO:0004842|GO:0016567
Lal9g0172 581 Gene3D - 250 497 - -
Lal9g0172 581 MobiDBLite consensus disorder prediction 531 573 - -
Lal9g0172 581 Pfam Ariadne domain 331 581 IPR045840 -
Lal9g0172 581 MobiDBLite consensus disorder prediction 541 560 - -
Lal9g0172 581 SUPERFAMILY RING/U-box 117 204 - -
Lal9g0172 581 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 -
Lal9g0172 581 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Lal9g0172 581 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Lal9g0172 581 SUPERFAMILY RING/U-box 262 319 - -
Lal9g0172 581 SMART ibrneu5 192 254 IPR002867 -
Lal9g0172 581 SMART ibrneu5 262 327 IPR002867 -
Lal9g0172 581 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0172 Lal-Chr9 1058498 1062883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0172 61 542 ARIADNE family AT2G16090 70.637 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0172 K11968 - gmx:100783343 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0172 9 1058498 1062883 Lal9g0172 9 1058498 1062883 ECH
Lal1g0249 1 1498186 1501671 Lal9g0172 9 1058498 1062883 LSH