Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0161 ATGGCTTCTGCTGATGTTGAATTCCGTTGTTTCGTTGGTGGGCTTGCATGGGCCACCGATAGCGAAGCTCTTGAGAAGGCTTTCTCCCAATATGGAGAAATCCTTGATTCGAAGATTATCAACGATCGTGAAACTGGAAGGTCTAGAGGTTTCGGATTTGTTACCTTTGCATCTGAGCAGTCCATGAAGGACGCGATCGAGGGTTTGAATGGACAGGATCTTGATGGACGTAACATCACCGTAAATGAGGCTCAGTCTCGTGGTTCTGGTGGTGGTGGTGGTGGCCGTGGTGGAGGTGGTTATGGAGGTGGTGGCGGTGGATTCCGAAGTGGTGGTGGGGGTGGATATGGTGGTGGTCGTCGTGAAGGTGGAGGTGGAGGTGGTGGATACAACAGAAATGGTGGTGGCGGTGGATATGGTAGTGGTGGTGGTGGTGGTGGTGGTGGATATGGCGGTGGAAGAGACCGTGGTTATGGAGGAGGTGATGGTGGATCCCGCTACTCTCGTGATGGTGAATCCGGTGGTGGCTGGAGGAACTAA 540 0.5315 MASADVEFRCFVGGLAWATDSEALEKAFSQYGEILDSKIINDRETGRSRGFGFVTFASEQSMKDAIEGLNGQDLDGRNITVNEAQSRGSGGGGGGRGGGGYGGGGGGFRSGGGGGYGGGRREGGGGGGGYNRNGGGGGYGSGGGGGGGGYGGGRDRGYGGGDGGSRYSRDGESGGGWRN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0161 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Lal9g0161 179 Gene3D - 2 118 IPR012677 -
Lal9g0161 179 PANTHER GEO13361P1-RELATED 1 121 - -
Lal9g0161 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Lal9g0161 179 MobiDBLite consensus disorder prediction 70 179 - -
Lal9g0161 179 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Lal9g0161 179 SMART rrm1_1 9 82 IPR000504 GO:0003723
Lal9g0161 179 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0161 Lal-Chr9 1018519 1019819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0161 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 1.69e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0161 - K13195 ccaj:109800369 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0161 9 1018519 1019819 Lal9g0161 9 1018519 1019819 ECH
Lal1g0225 1 1339452 1342886 Lal9g0161 9 1018519 1019819 LSH
Lal2g0141 2 852899 853875 Lal9g0161 9 1018519 1019819 LSH