Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0141 ATGGCTTCTGATTCCCCTCCCACCAATTTCAACAATGATCCTTCATCCCCCGACGATTCCCTTTCCAGCCCTATCGGCAACACCTTCTCTTCTCCCGGAGATACCTCTCGCCGGAGGCAACGCCGTCGTCGCTCTTTGACTCCTTCCGCCTTCGGAACCCCGCAGCGTAATCGTTCCCGATTCGCCTCCTCCGATGGTGCCACGCCTACTCCGTCCCGCTCCAGGCAAAGAGACGCCTCAACTCCCACCTCCACTGACGATATTCCGGCGTCATCTGAAGGCGGCGATGGTTACGACATGGAGGATTCCAGACCTACTTTTGTATGGGGCACAAACATAAGCGTTGAAGACGTGAACGATGCGATCCAAAGGTTTCTTAGGGATTTTAGAGAAGCTTCTTCGCAGAATGATGTTGATGAGTTGCATTTGCATACTGAAGGGAAGTATGAGAAAATGATAAAACATGTGATCGATGTTGACGGTGAGTCACTGGATGTGGATGCATGTGACGTGTTTGATCATGATCCTGATTTGTATACCAAGATGGTTAGGTACCCACTCGAGGTGCTTGCCATTTTTGATTTGGTTTTGATGAATATGGTTAGCCGGCTGAATCCTATGTTTGAGAAGCACATTCAAACTCGCATTTTCAACCTCAAAACCTCAACTTCAATGCGAAACTTGAATCCTTCTGATATTGAGAGGATGATATCATTAAAGGGAATGATTATACGGTGTAGCTCAATCATACCGGAGATCAGGGAAGCTATATTTAGGTGTATTGTGTGTGGATACTGCTCTGACCCTGTTGCTGTAGAGAGAGGACGAATAACGGAACCCACCATATGCTTGAGGGAAGAGTGTAAGTCCAGGAACTCCATGACACTGGTGCACAACCGATGCAGGTTTACCGATAAGCAAATTGTGAGGCTGCAGGAGACACCTGATGAGATACCTGAAGGAGGAACACCTCACACGGTGAGCGTGCTGATGCATGACAAGCTGGTGGATGCTGGAAAGCCAGGTGACAGAATTGAGGTGACTGGTATTTATAGGGCTATGAGTGTGAGGATTGGACCATCTCAGAGAACTGTTAAATCATTGTTCAAGACTTATATTGATTGTCTCCACATAAAGAAGAATGACAAGTCCAGAATGCTAATAGAGGATGCTATGGATGTTGACAATGGCCCTGGCAGAAGCTCAGAAGAAGTTTTCTTTGACAAGGATAAGGTGGCTCAACTGAAGGAGCTTTCAAGACAGCCAGATATTTATGAAAGACTAACAAGGTCAATGGCGCCAAACATCTGGGAGCTGGATGATGTAAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGAAATGCTTTGACTTTGGCATCTGGTGCTAGCTTCCGAGGTGATATAAATATTCTTCTTGTTGGTGATCCTGGTACAAGCAAGTCCCAACTACTTCAATACATTCACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCTGCTGTTGGATTGACTGCTTACGTGACCAAGGACCCTGAAACAGGCGAAACTGTTCTAGAGAGTGGCGCCCTAGTTTTGAGTGACCGCGGTATCTGCTGTATAGATGAATTTGATAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACAGTTTCAATAGCAAAGGCAGGTATTATTGCATCTCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGATCTCGATATAATCCTCGCTTGTCGGTCATTGAGAACATACACCTTCCTCCAACTCTTTTGTCCAGGTTCGATTTAATTTACTTAATTCTTGACAAGGCTGATGAGCAAACTGACAGGCGCCTCGCCAAACATATTGTTTCCCTTCACTTTGAGGATCCCGAGAGTACGGAGCAAGATGTGTTGGACCTTTCTACGTTAACCGATTATGTGAGCTATGCCAGAAAGAACATACACCCACAACTGTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTATGTGGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTAATAACAGCAACTCCGAGGCAGATTGAGAGCTTGATTCGTCTTAGTGAAGCCTTGGCTAGGATTCGCTTTTCCGAATTGGTTGAAAAGCATGATGTCATTGAGGCATTCCGGCTTCTGGAAGTTGCAATGCAGCAGTCTGCAACGGATCACTCTACTGGAACTATTGACATGGATCTTATTAATACTGGAGTTTCGGCAAGTGAAAGGATGAGACGTGAGAGTCTGCTGCAATCAATCCGCAACATAATCATGGAGAAAATGCAAATTGGGGGACCATCCATGCGTTTATTGGAGTTATTGGAAGAATTGAAGAAACAGAACACTGGCAGTGAAGTTCATCTTAATGATCTAAGGAATGCAATTACTACTCTTGCTAGCGAAGGATTTGTTAACATGCATGGTGACAGCGTAAAAAGATCTTGA 2505 0.4499 MASDSPPTNFNNDPSSPDDSLSSPIGNTFSSPGDTSRRRQRRRRSLTPSAFGTPQRNRSRFASSDGATPTPSRSRQRDASTPTSTDDIPASSEGGDGYDMEDSRPTFVWGTNISVEDVNDAIQRFLRDFREASSQNDVDELHLHTEGKYEKMIKHVIDVDGESLDVDACDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRLNPMFEKHIQTRIFNLKTSTSMRNLNPSDIERMISLKGMIIRCSSIIPEIREAIFRCIVCGYCSDPVAVERGRITEPTICLREECKSRNSMTLVHNRCRFTDKQIVRLQETPDEIPEGGTPHTVSVLMHDKLVDAGKPGDRIEVTGIYRAMSVRIGPSQRTVKSLFKTYIDCLHIKKNDKSRMLIEDAMDVDNGPGRSSEEVFFDKDKVAQLKELSRQPDIYERLTRSMAPNIWELDDVKKGLLCQLFGGNALTLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFEDPESTEQDVLDLSTLTDYVSYARKNIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSELVEKHDVIEAFRLLEVAMQQSATDHSTGTIDMDLINTGVSASERMRRESLLQSIRNIIMEKMQIGGPSMRLLELLEELKKQNTGSEVHLNDLRNAITTLASEGFVNMHGDSVKRS 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0141 834 Gene3D - 225 363 IPR012340 -
Lal9g0141 834 Pfam MCM OB domain 225 354 IPR033762 -
Lal9g0141 834 MobiDBLite consensus disorder prediction 46 90 - -
Lal9g0141 834 CDD MCM4 427 736 - -
Lal9g0141 834 ProSitePatterns MCM family signature. 533 541 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lal9g0141 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 750 IPR027417 -
Lal9g0141 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 465 480 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lal9g0141 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 525 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lal9g0141 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 553 566 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lal9g0141 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 577 589 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lal9g0141 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 604 612 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lal9g0141 834 Pfam MCM AAA-lid domain 650 736 IPR041562 -
Lal9g0141 834 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 74 833 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lal9g0141 834 Gene3D - 742 828 IPR036388 -
Lal9g0141 834 SMART mcm 221 738 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lal9g0141 834 Gene3D - 408 741 IPR027417 -
Lal9g0141 834 Gene3D - 112 219 - -
Lal9g0141 834 Pfam MCM P-loop domain 412 634 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lal9g0141 834 Gene3D - 252 304 - -
Lal9g0141 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 247 260 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lal9g0141 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 298 310 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lal9g0141 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 440 451 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lal9g0141 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 586 603 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lal9g0141 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 738 747 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lal9g0141 834 Coils Coil 794 814 - -
Lal9g0141 834 ProSiteProfiles MCM family domain profile. 424 630 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lal9g0141 834 MobiDBLite consensus disorder prediction 1 103 - -
Lal9g0141 834 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 74 833 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lal9g0141 834 MobiDBLite consensus disorder prediction 1 34 - -
Lal9g0141 834 SUPERFAMILY Nucleic acid-binding proteins 144 375 IPR012340 -
Lal9g0141 834 Pfam MCM N-terminal domain 121 223 IPR027925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0141 Lal-Chr9 902731 908192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0141 1 833 Core DNA Replication Machinery Family AT2G16440 74.296 0.0 1272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0141 K02212 - gmx:100782586 1403.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0141 9 902731 908192 Lal9g0141 9 902731 908192 ECH
Lal2g0124 2 753796 759715 Lal9g0141 9 902731 908192 LSH