Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0139 ATGAAGATACAGTGTGATGTGTGTAACAAGGAGGAAGCTTCTGTGTTTTGTTCTGCAGATGAAGCTGCTCTCTGCCATGCATGTGATCATACCATCCACCATGCCAACAAGCTTGCAAGCAAACATTCACGATTCTCTCTTCACTACCCAAACTCCAAACACTCCCCTCTATGTGATATCTGCCAAGAGAGACATGCATATGTGTTTTGCCGAGAAGATAGAGCAATATTTTGCACAGAATGTGACCTTCCTATCCATGGAGGCAACGAAAATAGCCAGAAACATAACAGGTTTCTACTCACAGGAGTAAAGGTTGGTGATTCATATCCAGACGTAACAGCACTACTAGGTTCCAAAAGCACTTCAACTGGCTCAGAAGGAAGAAGCTCTCGTTGTAATACAAACAAAAACATGGCTAGTGAGAAGGGTTCAGTTTCAAAAAGCAACATTTGTGAGTACTTGATTGAGACAATACCTGATTACTGCATGGAAGACCTTCTTGACGTTCCATAA 513 0.4211 MKIQCDVCNKEEASVFCSADEAALCHACDHTIHHANKLASKHSRFSLHYPNSKHSPLCDICQERHAYVFCREDRAIFCTECDLPIHGGNENSQKHNRFLLTGVKVGDSYPDVTALLGSKSTSTGSEGRSSRCNTNKNMASEKGSVSKSNICEYLIETIPDYCMEDLLDVP 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0139 170 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lal9g0139 170 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal9g0139 170 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 168 - -
Lal9g0139 170 MobiDBLite consensus disorder prediction 117 141 - -
Lal9g0139 170 CDD Bbox1_BBX-like 57 100 - -
Lal9g0139 170 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Lal9g0139 170 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal9g0139 170 Gene3D Classic Zinc Finger 1 99 - -
Lal9g0139 170 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 168 - -
Lal9g0139 170 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Lal9g0139 170 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Lal9g0139 170 CDD Bbox1_BBX-like 5 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0139 Lal-Chr9 898895 902104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0139 1 168 C2C2-CO-like Transcription Factor Family AT1G75540 47.449 5.85e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lal9g0139 zf-B_box 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0139 - - lang:109353034 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0139 9 898895 902104 Lal9g0139 9 898895 902104 ECH
Lal9g0139 9 898895 902104 Lal23g1455 23 14914968 14916678 ECH
Lal1g0202 1 1213746 1215029 Lal9g0139 9 898895 902104 LSH
Lal2g0122 2 745139 747631 Lal9g0139 9 898895 902104 LSH