Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0117 ATGGGAAGGTCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGTGCATGGACAAAAGAAGAAGATGATAGACTCATCTCTTATATTCGTGCCCATGGTGAAGGAAGTTGGCGTTCTCTCCCTAAATCCGCTGGCCTTCTCCGATGCGGCAAGAGTTGCCGTCTCCGGTGGATCAACTACCTCCGTCCTGATCTCAAACGTGGCAATTTCACTGAGGAAGAAGATGAACAAATCATCAAACTCCACACTCTCCTTGGTAACAAGTGGTCTCTGATAGCTGGAAGATTAGCAGGAAGAACAGACAATGAGATAAAGAATTATTGGAACACTCATATAAGAAGGAAGCTTTTGAACAGAGGAATTGACCCTGCAACTCATAGGCCTCTAAATGATGCTGATAATCATGCTCAGGACCAAGAAGTTCAAGCATCTGCTGCAGCAACCAACACTGTATCTTTTGCTTCATCTGCTTCTGCTGCAATTGTTAAACAAGAACAAGATACTAGTTTTACTAGTAATTCAACCATTTTTAGTGTTGTTGGAGAGAATAATACTAAAGTTGGCAAAGGAACTATGTTAGAACGTTGCCCTGACTTGAATCTTGAGTTAACTATTAGTCCTCCCCGTTTGAATGAGCCTGATGAACAATTCAAGAACATGGAGAAAAGCCTTTGCTTTAGTTGCAGATTGGGTTTGCAGAATAACAATCATTGCAACTGTGGGAATGGTAGTAACATTGGCAACATTAGTAGTGGGAACAGGAATAATAGTACTGCTACTAGTTATGATTTCTTGGGCTTGAAAACTGGTGTTTGGGATTACAGAAGATTGGAAATGAAATATGGACAATAG 852 0.4085 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGSWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEQIIKLHTLLGNKWSLIAGRLAGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNDADNHAQDQEVQASAAATNTVSFASSASAAIVKQEQDTSFTSNSTIFSVVGENNTKVGKGTMLERCPDLNLELTISPPRLNEPDEQFKNMEKSLCFSCRLGLQNNNHCNCGNGSNIGNISSGNRNNSTATSYDFLGLKTGVWDYRRLEMKYGQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0117 283 CDD SANT 69 112 IPR001005 -
Lal9g0117 283 CDD SANT 16 61 IPR001005 -
Lal9g0117 283 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal9g0117 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal9g0117 283 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 245 - -
Lal9g0117 283 SMART sant 66 114 IPR001005 -
Lal9g0117 283 SMART sant 13 63 IPR001005 -
Lal9g0117 283 Gene3D - 14 66 - -
Lal9g0117 283 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal9g0117 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal9g0117 283 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lal9g0117 283 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 245 - -
Lal9g0117 283 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal9g0117 283 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal9g0117 283 Gene3D - 68 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0117 Lal-Chr9 768831 770267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0117 1 280 MYB Transcription Factor Family AT4G38620 54.577 1.96e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal9g0117 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0117 K09422 - gmx:778030 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0117 9 768831 770267 Lal9g0117 9 768831 770267 ECH
Lal1g0157 1 1008605 1010137 Lal9g0117 9 768831 770267 LSH
Lal2g0097 2 598344 599771 Lal9g0117 9 768831 770267 LSH