Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0115 ATGGGTTCTGAGAGAGTAACTGGGAAGGTGAAGTGGTTTAATGATACCAAGGGTTTTGGATTCATTACCCCTGATGATGGTGGTGATGAACTCTTCGTTCACCAATCTCAAATAAAATCTGATGGATTTCGATCCCTCGCTGAAGGTGAATCTGTTGAGTTTCAAATCGATGCTGATTCTGATGGTCGATCTAAGGCCGTTGATGTAACTGGTCCTGATGGTGCTAATGTCCAGGGTAGTCGTCGTGGAGGTGGCGGTGGCGGTGGCGGTGGCGGTGGAGGAGGATACGGCGGTGGACGAGGTGGTGGAGGCTATGGCGGTGGTGGACGAGGTGGCGGACGTGGTGGAAGAGGAGGTGGAGGATATAGCGATGGTTATGGAGGCGGTGGTGGATACGGTGGAGGAGGTGGATACGGAGGAGGCGGTGGCGGTGGCGGTGGAGGCTGTTACAGCTGTGGTGAGTCAGGTCACATTGCTAGGGAGTGCCCGTCGGGAGGCGGTGGCGGTGGAGGAAGGTATGGAGGGGGCGGTGGCGGAGGTGGCGGTGGAGGTGGCTGCTACAGCTGCGGTGAGTCTGGCCACTTCGCTAGGGATTGTCCTTCCGGAGGTCGTTGA 615 0.5724 MGSERVTGKVKWFNDTKGFGFITPDDGGDELFVHQSQIKSDGFRSLAEGESVEFQIDADSDGRSKAVDVTGPDGANVQGSRRGGGGGGGGGGGGGYGGGRGGGGYGGGGRGGGRGGRGGGGYSDGYGGGGGYGGGGGYGGGGGGGGGGCYSCGESGHIARECPSGGGGGGGRYGGGGGGGGGGGGCYSCGESGHFARDCPSGGR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0115 204 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Lal9g0115 204 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Lal9g0115 204 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Lal9g0115 204 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lal9g0115 204 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lal9g0115 204 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lal9g0115 204 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lal9g0115 204 PANTHER COLD SHOCK PROTEIN 2 1 203 - -
Lal9g0115 204 ProSiteProfiles Zinc finger CCHC-type profile. 186 201 IPR001878 GO:0003676|GO:0008270
Lal9g0115 204 Gene3D - 2 83 IPR012340 -
Lal9g0115 204 SUPERFAMILY Retrovirus zinc finger-like domains 140 202 IPR036875 GO:0003676|GO:0008270
Lal9g0115 204 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Lal9g0115 204 Pfam Zinc knuckle 185 201 IPR001878 GO:0003676|GO:0008270
Lal9g0115 204 SMART c2hcfinal6 185 201 IPR001878 GO:0003676|GO:0008270
Lal9g0115 204 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Lal9g0115 204 MobiDBLite consensus disorder prediction 55 91 - -
Lal9g0115 204 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lal9g0115 204 Gene3D - 145 172 - -
Lal9g0115 204 Gene3D - 182 204 - -
Lal9g0115 204 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lal9g0115 204 SMART csp_8 7 72 IPR011129 GO:0003676
Lal9g0115 204 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0115 Lal-Chr9 758636 759250 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lal9g0115 CSD 3.5e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0115 - K09250 lang:109325901 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0115 9 758636 759250 Lal9g0115 9 758636 759250 ECH
Lal1g0145 1 943415 944035 Lal9g0115 9 758636 759250 LSH
Lal2g0088 2 548180 548764 Lal9g0115 9 758636 759250 LSH