Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0107 ATGGTTGTAGCACGTGCGAAGGTAGGTGATGTGACGGAATACGTGGATAGTCTCTCCGTAAAGAGATGGGCACGTGGAGAAACGTTTTCAACTTGGATAAGGCATTATTTTACCAAGATGAGCTCTCGGACAGGCAGGGGGCCTGTCAGAAGTTATCGACGGAGGAAGACAGTTTTGAACATTGACCTTAATCATGTGCCATCTGCTGATAATCGGGAACAGGAGGGACCTTCAACTGTGTTGGTGCCTCAACAAGTTCAGGCTATCCAGCAACCTCAGGCTGTACTAGAACCCCCGACTCAGTTGGGGACTGGACAAGTTCATGCTGTCCAGCAACCGCCGGCTGTACAACCTCCAACAATTGATGTGGAGGCGTTTGATGATGATGTTATTGAGTCTTCCCCAAGGGCTTTTGCTGAGGCTAAGAATAAAAACAATTCGAGAAGAAATCGCAGGAGGACTATAGTTGATGTTGATTTAGACGATCAGACTAGGGTAACCGACAATAATTGCAACAAACGCAACAGAGTCTCCCTAGGCCAATCAATTATTAACTGTGATCTTTATATAAACCTGGAAGGCAGTAGCAGTCTTGTGAGGGAAAATATGCCACCACCTGAACCTCCAAAAGAGCCTGTTTTCAACTGTCCAATATGCATTGGCCCTTTGGTAGAAGAAGTATCTACTAAGTGTGGTCACATTTTTTGCAAGGCTTGCATCAAGGCTGCAATAAGTGCTCAGAATAAATGCCCTACATGCAGAAAGAAGATTACTGTGAGATCCCTAATAAGGGTGTTTCTCCCATCAACTAGCTGA 816 0.4534 MVVARAKVGDVTEYVDSLSVKRWARGETFSTWIRHYFTKMSSRTGRGPVRSYRRRKTVLNIDLNHVPSADNREQEGPSTVLVPQQVQAIQQPQAVLEPPTQLGTGQVHAVQQPPAVQPPTIDVEAFDDDVIESSPRAFAEAKNKNNSRRNRRRTIVDVDLDDQTRVTDNNCNKRNRVSLGQSIINCDLYINLEGSSSLVRENMPPPEPPKEPVFNCPICIGPLVEEVSTKCGHIFCKACIKAAISAQNKCPTCRKKITVRSLIRVFLPSTS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0107 271 PANTHER ELFLESS, ISOFORM B 42 271 - -
Lal9g0107 271 SUPERFAMILY RING/U-box 211 266 - -
Lal9g0107 271 Pfam Zinc finger, C3HC4 type (RING finger) 215 253 - -
Lal9g0107 271 ProSitePatterns Zinc finger RING-type signature. 231 240 IPR017907 -
Lal9g0107 271 SMART ring_2 216 253 IPR001841 -
Lal9g0107 271 ProSiteProfiles Zinc finger RING-type profile. 216 254 IPR001841 -
Lal9g0107 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 269 IPR013083 -
Lal9g0107 271 PANTHER RING ZINC FINGER-RELATED 42 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0107 Lal-Chr9 677168 681809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0107 50 270 C3H Transcription Factor Family AT5G48655 47.534 1.09e-46 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0107 K22651 - gmx:100306616 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0082 2 489958 493522 Lal9g0107 9 677168 681809 LSH