Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0106 ATGGCTCCTAAAAGAGGTGTGAAGGCCCCAGTTGTAGCTTCTAAGAAGAAGCCTGAGAAAACGAACCCTCTGTTTGAGAAGCGTCCGAAGCAGTTCGGTATCGGAGGAGCATTGCCTCCAAAGAGGGATTTGACCCGATTCGTGAAGTGGCCAAAGACTGTTCAAATTCAAAGAAAAAAGAGGATCCTCAAGCAGAGGTTGAAGGTCCCACCTGCTTTGAACCAGTTCACTAAGACCCTTGACAAGAACCTAGCAACAAGCCTGTTCAAGATACTTCTGAAATACAGGCCTGAGGACAAGGCAGAAAAGAAGGAAAGGCTTTTGAAAAGGGCCCAGGCAGAAGCTGATGGCAAACCCGTTGAAGCTAAGAAGCCTATTGTTGTCAAGTATGGTCTCAACCATGTTACCTACCTTATTGAGCAGAACAAAGCACAACTTGTTGTGATAGCTCATGATGTGGATCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTTAAGGGCAAGGCTCGCTTAGGAACGGTTGTCCATAAGAAAACTGCTTCTGTTTTATGCTTGACTACTGTTAAGAACGAAGACAAATTGGAGTTCAGCAGAGTCCTTGAGGCTATTAAGGCCAACTTCAACGACAAGTATGACGAGTACAGGAAGAAGTGGGGTGGTGGTATCATGGGCTCCAAATCCCAAGCAAAGACCAAGGCTAAAGAAAGACTTATTGCCAAGGAAGCAGCTCAGAGGCTGAACTAG 777 0.4569 MAPKRGVKAPVVASKKKPEKTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEADGKPVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRLN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0106 258 SUPERFAMILY L30e-like 88 229 IPR029064 -
Lal9g0106 258 PRINTS Ribosomal protein L7A/RS6 family signature 128 142 IPR018492 -
Lal9g0106 258 PRINTS Ribosomal protein L7A/RS6 family signature 147 160 IPR018492 -
Lal9g0106 258 PRINTS Ribosomal protein L7A/RS6 family signature 163 173 IPR018492 -
Lal9g0106 258 PRINTS Ribosomal protein L7A/RS6 family signature 173 187 IPR018492 -
Lal9g0106 258 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 256 - -
Lal9g0106 258 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 118 205 IPR004038 -
Lal9g0106 258 ProSitePatterns Ribosomal protein L7Ae signature. 166 183 IPR004037 GO:0042254|GO:1990904
Lal9g0106 258 MobiDBLite consensus disorder prediction 12 26 - -
Lal9g0106 258 PRINTS Ribosomal protein L7A family signature 29 46 IPR001921 -
Lal9g0106 258 PRINTS Ribosomal protein L7A family signature 46 63 IPR001921 -
Lal9g0106 258 PRINTS Ribosomal protein L7A family signature 66 85 IPR001921 -
Lal9g0106 258 PRINTS Ribosomal protein L7A family signature 90 103 IPR001921 -
Lal9g0106 258 PRINTS Ribosomal protein L7A family signature 124 144 IPR001921 -
Lal9g0106 258 PRINTS Ribosomal protein L7A family signature 185 209 IPR001921 -
Lal9g0106 258 PRINTS Ribosomal protein L7A family signature 217 237 IPR001921 -
Lal9g0106 258 PANTHER BNAA03G47020D PROTEIN 2 256 - -
Lal9g0106 258 Gene3D - 50 233 IPR029064 -
Lal9g0106 258 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0106 Lal-Chr9 673533 676030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0106 1 258 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 87.645 2.25e-170 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0106 K02936 - jre:108984551 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0131 1 867511 870010 Lal9g0106 9 673533 676030 LSH
Lal2g0081 2 486673 488727 Lal9g0106 9 673533 676030 LSH