Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0098 ATGGGCAAGTCTAGCAAGAAATCAGCTACCAAAGTCGATGCTGCTCCAGCTGTAGTCGCTCCTTCCAAGTCTGCCAAAAAGGGCAAGAGGCAGCCTGCAGATGAAATTGAGAAGCAGCTGAGCGCAAAGAAGCAGAAGATAGAGGAGGTTGCCCAGAAACAGGAAAAGGAAGTTCAGGTTCAAAAGAAGGAAAGTTCAGATGTATCTGCACCAGAATCAGAAGGCGAGGCCCCAAAGCCCAAGGTTGCTGCTGATGTTGCTAAGAATGGATCTGCCCCTTCAACGAAAAATGTTCAGTCGACTGAAAGCTCTGAGGGCTCTGATGATGGCAGTTCCGATGATGAAAATGCAACCGAAGCTGCCAAGGATTTGCCTGCTGCTGTGGTTAAGAAGGCTGAATCAGACTCAAACTCTGATAGCTCAGGCGAAGATGATCCTGTGAAAGACTCAAAAGAAAGTTCCGGCGATAGTTCAGAGGAGTCAGAGGAGGAAAATGAGAAAAAATCTTCCAAAATGCCTCAGAAAAGTCCTAAAACCCCTTCCACACCGGCAGCAGAAAATGGTGGACCAAAGACACTATTTATTGGCAACCTGTCATATAGTGTGCAACGTTCCGATGTCGAAAATTTCTTCAAAGATTCTGGAGAAGTTGTTGATGTTCGTCTCGCCATAGATGACGATGGGAGATTTAAAGGCTTTGGACATGTTGAGTTTGCCACATCAGAGGAAGCCAAAACTGCCCTTCAACTGCATGATCAAGAACTGTTGAACCGTCCTGTTCGGCTTGATTTAGCTCGTGAAAGGGGTGCATATACCCCTAACAGTGGACCCAACAGCGGTAGCGTTAATAATTCCCAGACTGGTGGAAAAGGCCAATCTCAGACTGTATTTGTGAAGGGCTTTGATAGATCCCTTGGAGAACATGAGGCAATTTCATCATATTTTCATTTGATAGATCCCTTCATAAGTCTTATAAAATCTAGCCTGGAGGAGCACTTTGGTACCTGTGGGCAGATTACAAGGATATCTATTCCCAAAGATTACGAGTCTGGTGAAAGTAAAGGGTTTGCTTACTTGGACTTCAAAGATGGCGATAGCTTGAGCAAAGCTCTAGAACTCCATGAATCTGACCTGGGAGGTTATACACTTTCGGTGGATGAAGCCAAACCTAGAGACAATCAAGGTTCTAGTGGTGGTGGTAGGGGTGGCCGATTTGGTGGAAGGAGTGGTGGTAGGGGTGGCAGATTTGGTGGAAGAGACAGTGGTGGCAGATTTGGTGGTGGAAGGGATAGGGGTGGTCGATTTGGTGGTGGAAGAGGTGGTGGTGGTCGATTTGGTGGTGGTGGTCGCGGTCGTGGGCGTGGGGGAGGGAAGAAGACCACCTTTGATGATTAG 1395 0.4717 MGKSSKKSATKVDAAPAVVAPSKSAKKGKRQPADEIEKQLSAKKQKIEEVAQKQEKEVQVQKKESSDVSAPESEGEAPKPKVAADVAKNGSAPSTKNVQSTESSEGSDDGSSDDENATEAAKDLPAAVVKKAESDSNSDSSGEDDPVKDSKESSGDSSEESEEENEKKSSKMPQKSPKTPSTPAAENGGPKTLFIGNLSYSVQRSDVENFFKDSGEVVDVRLAIDDDGRFKGFGHVEFATSEEAKTALQLHDQELLNRPVRLDLARERGAYTPNSGPNSGSVNNSQTGGKGQSQTVFVKGFDRSLGEHEAISSYFHLIDPFISLIKSSLEEHFGTCGQITRISIPKDYESGESKGFAYLDFKDGDSLSKALELHESDLGGYTLSVDEAKPRDNQGSSGGGRGGRFGGRSGGRGGRFGGRDSGGRFGGGRDRGGRFGGGRGGGGRFGGGGRGRGRGGGKKTTFDD 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0098 464 MobiDBLite consensus disorder prediction 1 190 - -
Lal9g0098 464 Gene3D - 150 280 IPR012677 -
Lal9g0098 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 390 IPR000504 GO:0003723
Lal9g0098 464 SUPERFAMILY RNA-binding domain, RBD 182 291 IPR035979 GO:0003676
Lal9g0098 464 CDD RRM1_NUCLs 192 268 IPR034349 -
Lal9g0098 464 PANTHER BNACNNG45920D PROTEIN 100 429 - -
Lal9g0098 464 SUPERFAMILY RNA-binding domain, RBD 328 421 IPR035979 GO:0003676
Lal9g0098 464 Gene3D - 281 426 IPR012677 -
Lal9g0098 464 MobiDBLite consensus disorder prediction 27 70 - -
Lal9g0098 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 383 IPR000504 GO:0003723
Lal9g0098 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Lal9g0098 464 Coils Coil 33 64 - -
Lal9g0098 464 MobiDBLite consensus disorder prediction 136 173 - -
Lal9g0098 464 MobiDBLite consensus disorder prediction 90 106 - -
Lal9g0098 464 MobiDBLite consensus disorder prediction 269 293 - -
Lal9g0098 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 100 429 - -
Lal9g0098 464 MobiDBLite consensus disorder prediction 272 293 - -
Lal9g0098 464 MobiDBLite consensus disorder prediction 382 464 - -
Lal9g0098 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 267 IPR000504 GO:0003723
Lal9g0098 464 SMART rrm1_1 192 263 IPR000504 GO:0003723
Lal9g0098 464 SMART rrm1_1 295 386 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0098 Lal-Chr9 623085 627729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0098 156 372 Eukaryotic Initiation Factors Gene Family AT4G34110 25.346 3.40e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0098 K11294 - gmx:100786132 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0121 1 801002 806832 Lal9g0098 9 623085 627729 LSH