Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0086 ATGGATTGCACAGCTACCAGAAAGACTCAAAAGGCTGATAGAGAGAAGTTGAGGAGGGATCGACTCAATGAACAATTTGGAGAACTCGGTAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCAATTGCTGAATGACCTTACTTCTCAAGTTGGAAAGCTCAAAGACGAATATACTGCACTAAATGAAGAATCTCGTGAGGCAATATATTCTGCTCTTTTGGCTCAGGAGAAAAATGATCTCAGAGAAGAGAAGGCTTCTCTTAAATTGGATATTGAGAACTTAAATAATCAGTATCAGCAGCGACTCGGGACTATGTTTCCATGGTCTGCAATGGATCATTCGGTTATGATGGCTCCACCATCATATCCGTATCCAATGCCAGTACCAGTTCCTCCTGGCCCGATTCCCATGCAGCCGTACCCCTACTTTGCTAATCAAAATCTTGCAGTCATCCCTAACCCATGTTCAACATATGTTCCTTATTTAGCCCCCAACACCCTTGTTGAACAACAATCCACCCAGTATCTATCGCCACCAGTTCATCCAGGTAGTCGGTCTCACGTGTCAAACAAACAGGATTCCAGGCACAAGTCATCCAGGGAGAGCAGAGCTGAAAGAAGTCAGGCTTCTAATGAAGTTACTACGGACCTTGAGTTGAAGACTCCTGGATCTTCTGCAGAACAGGATTTATCATCTGGACAAAGAAAATCCAGCAAATCATCAAGGAAGGAAAACAGTTGCACCAAAGGGAGTTCTTTAGGTAGGTCTTCCTCGTCTCGTAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGAAGCAGAAAGGCTAATGAATGA 867 0.4337 MDCTATRKTQKADREKLRRDRLNEQFGELGNILDPDRPKNDKATILGDTIQLLNDLTSQVGKLKDEYTALNEESREAIYSALLAQEKNDLREEKASLKLDIENLNNQYQQRLGTMFPWSAMDHSVMMAPPSYPYPMPVPVPPGPIPMQPYPYFANQNLAVIPNPCSTYVPYLAPNTLVEQQSTQYLSPPVHPGSRSHVSNKQDSRHKSSRESRAERSQASNEVTTDLELKTPGSSAEQDLSSGQRKSSKSSRKENSCTKGSSLGRSSSSRSVQDSSSSSVVGSRKANE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0086 288 Coils Coil 53 73 - -
Lal9g0086 288 MobiDBLite consensus disorder prediction 254 288 - -
Lal9g0086 288 Gene3D - 2 67 IPR036638 GO:0046983
Lal9g0086 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Lal9g0086 288 Coils Coil 80 107 - -
Lal9g0086 288 MobiDBLite consensus disorder prediction 198 217 - -
Lal9g0086 288 Coils Coil 5 25 - -
Lal9g0086 288 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Lal9g0086 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 74 IPR036638 GO:0046983
Lal9g0086 288 PANTHER TRANSCRIPTION FACTOR BHLH121 1 287 - -
Lal9g0086 288 MobiDBLite consensus disorder prediction 182 197 - -
Lal9g0086 288 CDD bHLH_AtILR3_like 11 91 - -
Lal9g0086 288 MobiDBLite consensus disorder prediction 182 288 - -
Lal9g0086 288 PANTHER TRANSCRIPTION FACTOR BHLH121 1 287 IPR044579 GO:0003700|GO:0055072
Lal9g0086 288 MobiDBLite consensus disorder prediction 218 245 - -
Lal9g0086 288 SMART finulus 12 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0086 Lal-Chr9 553802 561462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0086 1 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 61.628 2.51e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal9g0086 HLH 8.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0086 - - cam:101491902 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0086 9 553802 561462 Lal9g0086 9 553802 561462 ECH
Lal1g0110 1 735387 738811 Lal9g0086 9 553802 561462 LSH
Lal2g0063 2 353371 356756 Lal9g0086 9 553802 561462 LSH