Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0052 ATGGGATCGCGATCCCCGAAATCATGTGGAGAGGAAGATGAGGGTTGTGGAACCACAGTTTCTGGCCAATCAGGGTCAACTAGCAGAAGTGCCGGGTTTCCATCTAGCCAGAGTGACCAGCCATTGGTTGCAACAGCTGCTGATAGCAGTTTTCTCAGATTAAACCATCTTGACTTGCATGGAGATGATGATGGATCACAGGAACTGGTTGCTAGCAAGAAGAAAAGGAGAGGTCAACGGGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTTCGACAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGGAGAACAACTTACAATGAGGTAGCAGATGAGCTTGTTACTGAATTTTCTGATCCAAGAAATAGTGTTTTGTCACCTGACCAGCAACAGTATGATGAGAAAAACATCCGTCGAAGGGTTTATGATGCTCTCAATGTTCTCATGGCAATGGATATCATTTCTAAGGATAAAAAGGAAATTCAATGGAAGGGTCTTCCTCGTACTAGTCTGAGTGATATAGAAGAACTAAAGACAGAGCGTCTTGGACTTAGGAATAGAATTGAGAAGAAAGCAGCCTATCTTCAAGAGCTGGAGGATCAATTTGTAGGTCTTGAGAACCTTATACAACGAAACGGACAATTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTGCCTTTCATTTTAGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTCGTGCACTTTGATTTCAACAGTACTCCTTTTGAGCTGCATGATGACAATTATGTTCTCAAGGCAATGAAACTTTCTGAGAGACCGCAAAATGATAATATGACACCCAATGGTGGTGGTGAAGGTTCTAGCATGCCAGGATTGTATCAATCACAAGTTCCTCCTCCAGTTTCAAAGCTTCCAGTTAGGCTTCCCTCATCACCTCCACTCCCAGGAATATTAAAGGCAAGAGTTAAGAATGAGCATTAG 1011 0.4303 MGSRSPKSCGEEDEGCGTTVSGQSGSTSRSAGFPSSQSDQPLVATAADSSFLRLNHLDLHGDDDGSQELVASKKKRRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVTEFSDPRNSVLSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKTERLGLRNRIEKKAAYLQELEDQFVGLENLIQRNGQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKLSERPQNDNMTPNGGGEGSSMPGLYQSQVPPPVSKLPVRLPSSPPLPGILKARVKNEH 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0052 336 CDD DP_DD 174 277 IPR014889 -
Lal9g0052 336 SUPERFAMILY "Winged helix" DNA-binding domain 89 170 IPR036390 -
Lal9g0052 336 Pfam Transcription factor DP 177 304 IPR014889 -
Lal9g0052 336 Gene3D Transcription factor DP 175 298 IPR038168 -
Lal9g0052 336 MobiDBLite consensus disorder prediction 62 89 - -
Lal9g0052 336 SMART E2F_TDP_2 86 169 IPR003316 GO:0005667|GO:0006355
Lal9g0052 336 MobiDBLite consensus disorder prediction 17 44 - -
Lal9g0052 336 Pfam E2F/DP family winged-helix DNA-binding domain 89 169 IPR003316 GO:0005667|GO:0006355
Lal9g0052 336 PANTHER DP TF 19 336 - -
Lal9g0052 336 PANTHER TRANSCRIPTION FACTOR DP 19 336 IPR015648 GO:0005667|GO:0051726
Lal9g0052 336 SUPERFAMILY E2F-DP heterodimerization region 176 295 IPR037241 -
Lal9g0052 336 MobiDBLite consensus disorder prediction 282 305 - -
Lal9g0052 336 Gene3D - 82 174 IPR036388 -
Lal9g0052 336 SMART DP_2 176 334 IPR014889 -
Lal9g0052 336 MobiDBLite consensus disorder prediction 279 336 - -
Lal9g0052 336 MobiDBLite consensus disorder prediction 1 44 - -
Lal9g0052 336 PIRSF Txn_factor_DP 4 336 IPR015648 GO:0005667|GO:0051726
Lal9g0052 336 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0052 Lal-Chr9 316629 321603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0052 87 285 E2F-DP Transcription Factor Family AT5G02470 55.000 2.07e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal9g0052 DP 7.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0052 K04683 - qsu:112000390 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0073 1 532131 539057 Lal9g0052 9 316629 321603 LSH