Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0046 ATGAGAGACGTTTGCAGAAACTTTCAGCGAGGCAGTTGTCAATATGGTGAGAGGTGTAGATATCTACATCAACAACAAAATACTAACAATCCATTTGGGTTCGGGTCTCAATCTCAAAACAACAACAACAACAACAACAACCCCTTTGGATTCAAACCTTTTGAAAACAAATGGAACCGCTCCAATCCCCAGAGCGCCGTTTCACGTCAATCCTCTAACAATCCTCAACCACCCAATCACAATTGCACTGACCCTGACGCCTGCAAGCGTCAAATTGCTGAAGATTTTCAACAAGAGAAACCACTCTGGATACTTACATGCTACACTCATTCTAAAGGTGCTGCTTGTGACATTGTTGGCGATATTAGCTATGAAGAATTAAGGGCATCAGCTTATGAGGATGCTAAGAAGGGGATCACTCTGCAATCCATAGTTGAAAAAGAGAGAAATTTACTAAAATCTAAGATGGCTGAGTTTGAGAAGCTCCTTTCTCAACCCTACACAAGGCCACTCAATTCCTCTATTCACACTCAAAATCACCACTCTATTGCACCCAACACAAATCCATTTTCCACAACTACTCAAAATACCGCTCCTTTGTCTGTCTCAAGCTTTAGCCAACTCGGTGCTTCATTGAACATGGCTTCTGAAAGGCCTTCTGCACCACTAATAAACAGTCCAGCACAGATTGGTTTCTTTGGAAACGGAGGTACACATCTAATGAGCACTCCGGTGCAGCCTAATCTCTTTGGATTTGGAGGAAACTCTTCGGCATCCAACACAGCAAATCTAAGCGGCAAAGGCTTCTCAGGTCCTCAAAGCAGCCCCAATTCAAATACTCAGCAACCATCCGCTGCTTTCAATGACTTTAGCTCATTTACAATGTTTCAAACAACCTCTGATGTTCAGTTAAATAAGCCCCAAGTGGAGAATGTGTCTGGAGATACCAGTATTTGGTTAAAAGAGAAATGGAATCCTGGAGAGATTCCGGAAGAAGCTCCTCCAGATGCATTTGTTCGGTAG 1023 0.4291 MRDVCRNFQRGSCQYGERCRYLHQQQNTNNPFGFGSQSQNNNNNNNNPFGFKPFENKWNRSNPQSAVSRQSSNNPQPPNHNCTDPDACKRQIAEDFQQEKPLWILTCYTHSKGAACDIVGDISYEELRASAYEDAKKGITLQSIVEKERNLLKSKMAEFEKLLSQPYTRPLNSSIHTQNHHSIAPNTNPFSTTTQNTAPLSVSSFSQLGASLNMASERPSAPLINSPAQIGFFGNGGTHLMSTPVQPNLFGFGGNSSASNTANLSGKGFSGPQSSPNSNTQQPSAAFNDFSSFTMFQTTSDVQLNKPQVENVSGDTSIWLKEKWNPGEIPEEAPPDAFVR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0046 340 MobiDBLite consensus disorder prediction 177 197 - -
Lal9g0046 340 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Lal9g0046 340 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Lal9g0046 340 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 338 - -
Lal9g0046 340 PANTHER MAKORIN-RELATED 2 338 IPR045072 -
Lal9g0046 340 MobiDBLite consensus disorder prediction 30 86 - -
Lal9g0046 340 MobiDBLite consensus disorder prediction 263 286 - -
Lal9g0046 340 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Lal9g0046 340 Gene3D - 1 62 - -
Lal9g0046 340 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Lal9g0046 340 MobiDBLite consensus disorder prediction 30 81 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal9g0046 zf-CCCH_4 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0046 K14321 - gmx:100814339 396.356