Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0031 ATGGGTAGAGGGAAGATTGAGATAAAAAAGATTGAGAATGCTAATAGCAGACAAGTTACATTCTCAAAGAGGAGAGCTGGATTGTTGAAGAAGGCTAAGGAACTTGCTATTCTATGTGATGCTGAGGTTGCTGTTATCATTTTCTCAAATACTGGGAAACTCTTTGACTTTTCAAGTTCTGACATGAAGCGAACTCTTTCAAGATACAATGAATATATTGATTCTTCAGATGCAGCTGTAGTGGAATATAGAAAAGAGGAGGAGTCTAAGATGGTGGAGATGCTTAAAGATGAGATCGCAAAGCTAGATGCAAAACAGTTACGGCTTTTGGGTAAGGACTTGACAGGATTGAACATAAAGGAACTGCAACTTCTGGAGCATCAACTTAACGAAAGTTTATTGGCTATCAAGGAGAGGAAGGATGAATTGCTTATGCAACAACTGGAGCAGTCTAGAGTACAGGTATTTGTTGTGATTTTGTGTGGATTTTGGCTTGAGAAATCAAGTTCCTTGCAATGGAGCAAAGGGCTCTGTTGGAGAATGAAACTTTGCGAAGACAGGCAAGTCGAGGAGCTTCGTTGTCTGTTTCCATTGACAGAACGTGTAGTCCCATCTTTTCTTCCTTATCGCAAGATGGAAAGGAAGAATGTCTTGGTAGATAACGGTGTTAAATGTCCCAACCTAGCCAGTAACTGCGCAAATGAGAATGGATATTCAGACACCACATTGCATTTAGGATTGCCAAATGATGTTCATCAAAAGAGGAAGGGACCTGAGAAAGAAACCATTTCTAATGATTCAGAGAGTGAAATGGCTTTACTCTGA 825 0.4 MGRGKIEIKKIENANSRQVTFSKRRAGLLKKAKELAILCDAEVAVIIFSNTGKLFDFSSSDMKRTLSRYNEYIDSSDAAVVEYRKEEESKMVEMLKDEIAKLDAKQLRLLGKDLTGLNIKELQLLEHQLNESLLAIKERKDELLMQQLEQSRVQVFVVILCGFWLEKSSSLQWSKGLCWRMKLCEDRQVEELRCLFPLTERVVPSFLPYRKMERKNVLVDNGVKCPNLASNCANENGYSDTTLHLGLPNDVHQKRKGPEKETISNDSESEMALL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0031 274 Coils Coil 85 105 - -
Lal9g0031 274 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 252 - -
Lal9g0031 274 MobiDBLite consensus disorder prediction 249 274 - -
Lal9g0031 274 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lal9g0031 274 ProSiteProfiles K-box domain profile. 85 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal9g0031 274 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal9g0031 274 PANTHER MADS BOX PROTEIN 1 252 - -
Lal9g0031 274 MobiDBLite consensus disorder prediction 249 266 - -
Lal9g0031 274 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal9g0031 274 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal9g0031 274 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal9g0031 274 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal9g0031 274 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal9g0031 274 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal9g0031 274 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Lal9g0031 274 Pfam K-box region 86 152 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal9g0031 274 Gene3D - 14 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0031 Lal-Chr9 177168 180763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0031 1 272 MADS-box Gene Family AT5G13790 45.683 1.70e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal9g0031 K-box 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0031 - - rcu:8259342 310.842