Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0020 ATGGCGGAACCACCACCACCTCCTCCTCCTCCTCCTTCTTCTTCTCCTGCTAGGGTTTACAGTTCTCTTATTCAACACCCAACCGCAGGGATCATCAAGAAGCTTCGATTGCTCAATTTCATGTGTCATTCCCACCTCGAGACCCATTTCGACAACTTCCTCAATTTCATTACCGGTCAAAATGGAAGTGGTAAGAGTGCAATTCTAACTGCGTTGTGCATTGCATTTGGTTGTCGAGCTAAAGGGACTCAAAGAGCATCCACTTTGAAGGACTTCATTAAAAACGGTGCCAGCAATGCTGTCGTCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTTAAACCTGAAAAATACGGCGATCTTATTATTGTAGAACGAAGGATATCTGAATCTTCAAGCTCTATCACATTAAAAGACCACCAAGGAAAAACAGTCAGCCACGGGAGAGCAGATCTCCAAGAAATAATTGAACATTTTAATATTGATGTGGAGAATCCATGTGTGATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAATAGCAAAGATAAATTTAAGGCCACACTTCTTCAGCAAGTCAGTGATCTACTGGAAAGCATTTCTAGCGAAATAAATATTGCAGCTGGCATAGTTGAAGAATTAGAGGCTGCAATAAGGCCCATAGAGAAGGAACTCAGAGAGATTGAAGCTAAAATTAGAGCTATGGAACATGTAGAGCAAATATCTATGCAGGTTCAGCAGTTAAAGAAGAAACTTGCATGGTCATGGGTTTATCATCTGGACAGGCAACTTAAAGTACAGAACGAAAAAGTTGAAAAGCTGAAGAGCCGGATACCTTCCTGCCAAGCTAAGATTGACCAACAACTGCGTCGAATTGAGAGGTTGGTGGAAAACTGTTCCATGAAAAAAGATGAAATTGCAAATATGTTGGAAAAGACATCACAAGTTAAGCAATTGAAGGAAAACTTAAGCCACTCTGTGTCCTCGGCCACAAAAGAAGCATTAGAACTTGAGCTGGACTGCAAATCCAAAACTAGCAACGTACGGAAAATGGAGCAGCAACTTAGAACGCTTAAACAACAAATGCAGGATATCCGTGAGCAGCATGTGAAAAATACTCAGGCTGAAGAGGCTGACATGGAGGAAAAACTGATAGTGCTCCAAGAAGAAGTTCGCTCTGCTGAGTTGGATCTGAAAAGGCTGAAGGAAGAGGAGATTATGTTGAGTAACAGCGTACAAAACATAAAAGATGAAATCAGAAAGATTGCTGATGAGATCCAAGATCATGAAAAAAGGCATCGTGGTCTTTCCTCTAGTATTCGTGATCTTCATCAACACCAAAGTAACAAGATTGCAGCTTTTGGAGGACATAAAGTGATGACCCTTTTACGCATGATTGAGAGAGATCATCGAAGGTTTAAGATGCCACCTATTGGTCCAATTGGTGCCCATCTGAAGTTGCTTAATGGCGATAAATGGGCGCTCGCCGTTGAACATGCAATTGGGCGAATGCTCAATTCTTTTATAGTGTCTGATCATAAGGATCTTCATCTTCTGAAACAATGTGCGAAGGAAGCGCACTATGATAACCTTCAAATTATTATTTATGACTTTTCCAGACCAAGGTTGACAATACCACCACACATGCTTCCTGATACAAACCATCCATCAATTTTTTCCATCTTGCAATCAGATAATCATATTGTGATTAACGTCTTAGTGGATTTGGGAAATGTTGAAAGACTAGTGCTCGTTAATGATTACAATATTGGAAAAGTGATTGCTTTCGAACAAAGGATCCATAATTTGAAGGAGACTCATATTCCCCCAAGTAAATGGATAAGAACTGGACGTCTACGTAGTTCTTTTGAAGATCAGATTAAGGATCTTCAAATTGAAGCATCCGATGAACAAAAGGCAGCTAATGATGGCAAAAGGAATAAAAGAGAGGCAGAGATCAAGCTTGAGGAGCTTGAAAGTAAACTGAAATCTATAAAGAGGGTTTGTTTTAATGCCGAAAAAAGTTATTCTTCTAAGAAACTAGCTCTGGATGAGGCAATGCATCAACAGGCTGTGGAAAAGAGCTCAGCGCCTTCATCATCTGTTGATGAGCTTATTGAGGAATTTTCAGAAGTCCAGAAAAAAATAAAAGATGAAGAAGACTTGTTGAAAGACCTTCAGCATAGGAGACATGAAGCAGATGGAAAAGCAGAAGATCTTAAATTAAAATTTAGCAAGCTGTGCGAGTCAGCGAACGGGGAAATTGCCGCCCTTGAGAAAGCTGAGAAAGAACTAGTGGAGATTGAAAGAGAAATGGATTTGGCAAAAAGGGATAAGGATCATTATGATGGTGTCATGAAAAATAAGGTCCTACCTGATATTAAAGATGCAGAAGAATGCTATCTGAATCATGTGAAGACACGTGAGGAGAACATTAAAAAGGCTTCCATAATTTGCTGTGAGAGGGAACTTGATTCATTAGGAGGTTCTGATGGGAGCACCCCAGAGCAAATCAGCGCCCAGTACTCTGAATCAATTGATGATCTTAGGATGCTGTATGACAAAAAATTACGCACGATTACAAGAAGGCAGCAAGTTTACCAAGCCCTTAGACAGAAATTGGAGGCTTGCAAGAGAGCATTGAAGTTAAGAAGGGGCAAGTTTCAGAGAAATGCAAATTACTTGAAGCGACAGCTTTCTTGGAAATTTAATGCCCATCTGAGAAGGAAGGGGATCAGTGGACTTATCAAAGTTAGTTATGAGGAGAAAACCTTATCGATTGAGGTACAGATGCCGCAAGACGCATCAAACCGAGCTGTTCAAGACACTAGGGGGCTTTCAGGTGGAGAGCGTTCTTTTTCCACATTGTGCTTTGCATTGGCCCTTCATGAAATGACAGAAGCCCCTTTCAGAGCAATGGATGAATTTGATGTATTTATGGATCCAGTAAGCAGAAAAATAAGCTTGGACAGTGTGGTGGATTTTGCTACGGCACATGGATCCCAATGGATATTCATCACACCGCATGATATTAGCTTGGTGAAGGCGGGGCCCAGGGTTAAGAAGTTGATAATGGCTGCCCCACGTTCTTAA 3105 0.4081 MAEPPPPPPPPPSSSPARVYSSLIQHPTAGIIKKLRLLNFMCHSHLETHFDNFLNFITGQNGSGKSAILTALCIAFGCRAKGTQRASTLKDFIKNGASNAVVHVEIQNEGEDAFKPEKYGDLIIVERRISESSSSITLKDHQGKTVSHGRADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNSKDKFKATLLQQVSDLLESISSEINIAAGIVEELEAAIRPIEKELREIEAKIRAMEHVEQISMQVQQLKKKLAWSWVYHLDRQLKVQNEKVEKLKSRIPSCQAKIDQQLRRIERLVENCSMKKDEIANMLEKTSQVKQLKENLSHSVSSATKEALELELDCKSKTSNVRKMEQQLRTLKQQMQDIREQHVKNTQAEEADMEEKLIVLQEEVRSAELDLKRLKEEEIMLSNSVQNIKDEIRKIADEIQDHEKRHRGLSSSIRDLHQHQSNKIAAFGGHKVMTLLRMIERDHRRFKMPPIGPIGAHLKLLNGDKWALAVEHAIGRMLNSFIVSDHKDLHLLKQCAKEAHYDNLQIIIYDFSRPRLTIPPHMLPDTNHPSIFSILQSDNHIVINVLVDLGNVERLVLVNDYNIGKVIAFEQRIHNLKETHIPPSKWIRTGRLRSSFEDQIKDLQIEASDEQKAANDGKRNKREAEIKLEELESKLKSIKRVCFNAEKSYSSKKLALDEAMHQQAVEKSSAPSSSVDELIEEFSEVQKKIKDEEDLLKDLQHRRHEADGKAEDLKLKFSKLCESANGEIAALEKAEKELVEIEREMDLAKRDKDHYDGVMKNKVLPDIKDAEECYLNHVKTREENIKKASIICCERELDSLGGSDGSTPEQISAQYSESIDDLRMLYDKKLRTITRRQQVYQALRQKLEACKRALKLRRGKFQRNANYLKRQLSWKFNAHLRRKGISGLIKVSYEEKTLSIEVQMPQDASNRAVQDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDPVSRKISLDSVVDFATAHGSQWIFITPHDISLVKAGPRVKKLIMAAPRS 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0020 1034 CDD ABC_SMC6_euk 32 186 - -
Lal9g0020 1034 Coils Coil 374 436 - -
Lal9g0020 1034 Pfam RecF/RecN/SMC N terminal domain 32 1013 IPR003395 -
Lal9g0020 1034 Coils Coil 215 235 - -
Lal9g0020 1034 Coils Coil 289 316 - -
Lal9g0020 1034 CDD ABC_SMC6_euk 938 1034 - -
Lal9g0020 1034 Coils Coil 706 747 - -
Lal9g0020 1034 Coils Coil 755 782 - -
Lal9g0020 1034 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 16 1034 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lal9g0020 1034 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 16 1034 - -
Lal9g0020 1034 SUPERFAMILY Smc hinge domain 436 603 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lal9g0020 1034 Coils Coil 624 679 - -
Lal9g0020 1034 Gene3D - 32 280 IPR027417 -
Lal9g0020 1034 Coils Coil 338 372 - -
Lal9g0020 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 1024 IPR027417 -
Lal9g0020 1034 Gene3D - 727 1026 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0020 15 1034 Structural Maintenance of Chromosomes family AT5G61460 55.545 0.0 1112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0020 K22804 - gmx:100816916 1368.6