Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0011 ATGACTCCACTTAATTTGGCAGGGCAGTTCGGTGACACCACATACACTAAAGTGTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAAAGAGACTATGAACAAGTATTTTGAGCAGTTTGGTGAGATCTTGGAGGCCGTTGTCATCACTGACAAAACCACCGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGTGAACCAGATGCTGCCATGAGAGCTTGCGTGGATGCTTCTCCCGTAATCGATGGCCGTAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTACAGAGATCTAAGCCTTCAACCCCGAAGCATGGAGGAGGAGGTGGCAGGAACTTTAGGGTAATGGGTTCTTTCCAAACAGGTTTTGGAGGTGGAGGAGTGGGGTCAGCTTTTGCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATGCCTTATAATCTTTATGGGTATTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATAGTGTGTATGGAGGAGCAACAGGAGGAGGAGGACAGTACCCAGTTTATGGAAGTGGAGGAATGATGACGGGTGGTGGTGGTGGTGGTGCAGCATTCTACCCATATGTCCAGTACGGTGGAGATGGGAGTGGCAGTGGTTATACTAGTTCAGGGGGACAGGGTGGTTATGGTGCTGTGAACTATCAGCCACACCTATTTCAGTATTCTCATATTGCTGCTGCTTCAACTGCTGCACATGGTGGTTATACTCAGCACTATGCAACACCCATCTCTCTCCCACCTTCCCCTGCAATGCAATCAGGCGTGACAATGGCTCTTCAACCTCTAATTCCTCATCGCTAG 846 0.4882 MTPLNLAGQFGDTTYTKVFVGGLAWETQKETMNKYFEQFGEILEAVVITDKTTGRSKGYGFVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNFRVMGSFQTGFGGGGVGSAFASAATFPHYAIQQGMPYNLYGYSPYSPDYTYPTSYYSVYGGATGGGGQYPVYGSGGMMTGGGGGGAAFYPYVQYGGDGSGSGYTSSGGQGGYGAVNYQPHLFQYSHIAAASTAAHGGYTQHYATPISLPPSPAMQSGVTMALQPLIPHR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0011 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Lal9g0011 281 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lal9g0011 281 PANTHER OS01G0876800 PROTEIN 1 275 - -
Lal9g0011 281 PANTHER BOULE-RELATED 1 275 IPR037366 GO:0003729
Lal9g0011 281 SUPERFAMILY RNA-binding domain, RBD 12 116 IPR035979 GO:0003676
Lal9g0011 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Lal9g0011 281 Gene3D - 7 113 IPR012677 -
Lal9g0011 281 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0011 Lal-Chr9 66776 71805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0011 12 92 C2H2 Transcription Factor Family AT2G19380 41.975 4.27e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0011 - - adu:107477578 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0013 1 160159 168116 Lal9g0011 9 66776 71805 LSH