Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0003 ATGAAACTACAGCCACATACTCCAGGGGGACAGGTACCTAATCAAGCAGGGTCTCAGTTACCTGGACTGGCCCAACTAAATGGGAATGTCCTCCCTCCCCAAATGCCAAATTTAGGTGGTATACCACATTCAGCAATCAATATGGACCCGGAATTTCTGATGTCACGCTCATCTATGCAAGAGAGGATCTGTGATATTATATTGCAACGACAACAACAACCGGTTACAGAAGTGCATAGAAGGAAAGTTAGAGATCTTGCAAAACGCCTGGAGGAGGGCATGTTAAAATCTGCTCGCTCTAAGGAGGACTACATGAACTTGGAGACACTTGAGACTCGTTTATCTAATTTCCTTAGACGAGCATCAATGAATAATCACAACCAACAGTATCCACAGCCTGTTGGCTCATCCCCAATTGGTACAATGATACCAACTCCTGGTTTGTCTAATGGCTATCAGCAGTCTTCTACCAGCTTTTCTGTTGGGTCGGGAGCAAACATAACATCAACTGGGGTGCAGAGAATTGGAAGCCAGATGATTCCCACTCCTGGATTTAATGTCAGCAGTAATCACTCACACATGACTGCAGATTCTTCTACGAACAGCAGTGCCTTTTCTGGTGTAGATTCTATGATGGTATCACAGCCACAGCTGCAGCAGCAGAAGCAGCAACATGCTGGTGGCCAAAATAGTCATGTAATACAGAACCTTGGCAGCCAAATGGCTAGTGGAATGAGATCTGGTTTACTGCAAAAACCGTTCGCAAGCTCAAATGGTGCTATAAATGGCGGGCTGGGCTTGATTGGAAACAATGCAGCGAATGAACCTGGCACTTCTGATGGCTATGCATCAACTTATGTTAATTCCCCTAAACACTTACAGCAGAACTTTGATCAAAATCAGCAAACAGTTGTACATGGTGATGGATATGGATTGAATAATGCCGACACTTTTGCTTCTGGAAATTTTTATGCTTCTGTGACGTCCTCTGGGTCTATGATGAACACTCAGAACATGAATTCAGTTAAATTGCCATCAATTCCCAAAACCAGCTCAATGATAAGTGGTCACTCAAATTTGCATGGCATGCATCAGGCTGGTCATATAAAGTCTCAAGCAATTAATCCATCGGAAAAGTTGAATTTTCAGTCTTCATTGACTTCAAGAGATGACCTTCTGCATTTTCAACAGCAATATCAGCAAAGACCCCAGCAATTTCAACAGCCAGAGCAGTATGCACAGCAGCAATTTCAACTGAAGCTGCAAAGTCAACAACGTCAACATTTGGTCAATAGTGATGCTTTCAGTCAATCTCAGATGTCTGCCAATCTAGAAAGCCGAGTTAAGTCTGAGCCTGGAGTTGAACACCAGAAAGAGGTGCTCAGTTCTCATGTTTCTGAACAGTTCCATATGTCTGAGATGCAGAGTCAGTTTCAGCAGAACTCGTCTGAAGATTGCTCTAGGGGTGCTCAACATCGTTCATTTCCATCTGGTCAGCATGATATATCCTTATCAACACCTCAAAATTCACAACAAATGTTGCACCCACTCCAGTTGGTTGCGGAGTCTCGGAGTAATTTTAGCTCTCTTACCATTGGGGCACAACCCAAATCAGTAGTTCCAAACCAATGGCCTCAATCTCAAGATGGTAACCACATACCTGGAAATATTTCACATGACCAACATCTTCAAATGGATTTCCATCGAAGCATACCAGGCCAAGGTGAAGCTCAATGCAATAATTTGTCATCAGATGCATCTATTATTGGTCAAGCTGCTGCTTCTAGAGGCTCAGCTGAGCTACTAGATTTGGGCAGTGCTATAAAAAACGCACACAGAAATCAACAGAGGTGGCTTTTATTTCTACTTCATGCTCGACGATGCTCTGCCCCTGAAGGACGATGCCAAGAACGCTGTTGTTCTCTTGCGCAAAAGTTATGTAAGCACATAGATGGATGCACCATGCGCCATTGTCCATATCCTCGTTGCCATCATACTAGGGTATTGCTTCATCATTTCATAAACTGCAAGGATCCATGTTGCCCCGTTTGTGTTTTTGTAAGAAACTATCGACGCACATTTCAACTCAAGCCTCAGATTCGGCCAGAAGCTGAATCAAGTTTGCCAATTGCAGTAAATGGATCCTGTAAATCACACAATATTGTAAGCCCATCGCCTAGATTGATCTCAAAGCCTCCGCTAGTTGTTGAAACTTCAGAAGACCGGCATTCATCTCTGAAACGCATGAAGACTGAGCACAGCACACATTCCGTTAATCCTGGAAATGACAATTCTGCTTCATCTTTTTCTGCAAATTGTGAATCACATGTTGCCATGGATTCTCAGTCCCAAGCCTATCCCAGTGCTGAGATGTCTATCTCAATTAAACCTGAACTTCCGGAAGTTAAGGCAGAAGTTCAAGCACATTTGGTACACATAAAGCTGAGCGAGATGGACATGGACAACAATAATGCGGAGAAAAAAATGTCTGGTGGTGAACCTGTCACATATGATGAACCTGCTAATTTAGCTAGGACAGAAAGCATTAAAAATGAGGAGACTGGACAAGGAAAACAAGAAAATGTTATACAGCCTTCTGAAAATGTTGCTGGAACCAAATCTGGTAAGCCAAAAATAAAGGGGGTCTCGCTCACTGAATTATTTACTCCAGAGCAAGTCAGGGGACATATCACTGGCCTCAGGCAGTGGGTTGGCCAAAGCAAGTCAAAAGTAGAGAAGAATCAAGCAATGGAGCACTCAATGAGTGAGAACTCCTGTCAATTGTGTGCTGTTGAGAAGCTTACTTTTGAACCACCACCTATTTATTGCACAACTTGTGGTGCTCGCATTAAACGAAATAATATGTATTACACCATGGGTGCTGGTGATACACGACATTATTTTTGTATTCCATGCTACAATGATGCTCGTTCAGAGAACATTAATGTTGATGGGACTCCCATTCCTAAGTCAAGACTGGAAAAGAAGAAGAATGATGAGGAAACTGAAGAATGGTGGGTTCAATGTGATAAATGTGAAGCTTGGCAACACCAGATTTGTGCCTTATTTAATGGTAGAAGAAATGATGGTGGACAAGCTGAATACACTTGCCCTAACTGCTATATAGAAGAGGTCGAAAGAGGAGAGCGCAAACCCTTACCCCAAAGTGCTGTTCTTGGAGCCAAGGATTTGCCAAGAACTATTCTCAGTGACCAAATAGAACAGCGACTATATAGACGACTAAGGCAAGAAAGGCAAGAGAGGGCACGGGTTCAAGGGAAAAGTTATGACGAGGTGCCTGGAGCTGATTCGCTTGTTGTAAGGGTTGTTTCATCTGTTGACAAGAAGTTAGAAGTGAAACAACGATTTTTGGAGATTTTTCAGGAAGAAAATTACCCAATAGAATTCCCATACAAATCCAAGGTAGTTTTGTTGTTTCAGAAGATTGAAGGTGTGGAAGTCTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAAGCTCAATTTCCCAATCAGCGCCGGGTATATCTTTCATATCTGGACTCCGTGAAGTACTTTAGGCCTGAAGTTAAAGCAGTGACAGGAGAGGCTCTCCGGACGTTTGTTTATCACGAAATCCTGATCGGCTACCTTGAATATTGCAAGAAACGTGGTTTTACGAGTTGCTATATATGGGCATGTCCTCCATTGAAGGGTGAAGACTATATTTTATACTGTCATCCAGAAATTCAGAAAACACCAAAATCTGATAAGCTTCGGGAATGGTATCTGGCCATGTTAAGAAAAGCTGCCAAGGAGAATATTGTGGTCGATCTTACCAACTTATATGATCATTTCTTTGTATCTACTGGTGAATGTAGGTCTAAGGTTACAGCAGCAAGACTTCCGTATTTTGATGGAGACTACTGGCCTGGGGCTGCAGAGGATTTGATTTATCAGCTTCGCCAAGAGGAAGATGGGAGAAAACAAAATAAGAAAGGAACAACTAAAAAGACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCTCGAAAGATCTGCTCCTTATGCACAAACTTGGTGAAACCATTAGCCCGATGAAGGAGGATTTTATTATGGTTCATTTGCAGCATGCATGTACTCACTGTTGTATTCTAATGGTGTCTGGCAACCGTTGGGTTTGCAACCAGTGCAAAAAATTTCAGCTTTGTGATAAGTGTTATGAAGCAGAACTAAAGCGTGAGGAGAGAGAAAGACATCCTATTAATCAGAGGGAAAAACACACCCTTTATCGGGTTGAAATTACTGATATACCAGCTGATACAAAGGACAAAGATGATATTCTTGAGAGTGAATTCTTTGACACTAGACAGGCATTTCTGAGTCTTTGCCAGGGAAATCATTATCAGTATGATACACTAAGGCGGGCCAAGCATTCCTCAATGATGGTGCTCTATCATCTTCATAATCCAACTGCTCCTGCATTTGTGACAACTTGTAACATATGCTATCTTGACATTGAAACGGGCCAAGGTTGGCGTTGTGAAGTTTGCCCCGAGTACGATGTATGCAATGCTTGTTATCAAAAGGATGGAGGCATTGATCATCCTCATAAATTGACAAATCATCCATCGATGGCAGATCGTGATGCTCAGAACAAAGAAGCAAGGCAGCTTCGAGTATTGCAGCTACGTAAAATGCTTGATCTGCTTGTGCATGCATCCCAATGTCGTTCTGCACATTGCCAATATCCAAATTGTCGTAAGGTAAAGGGCCTTTTCCGCCATGGGATGCACTGCAAAACTCGTGCGTCTGGAGGTTGTGTTCTTTGCAAGAAGATGTGGTATTTGCTTCAACTTCATGCTCGTGCATGCAAAGAATCTCAGTGCCATGTACCACGTTGCAGAGATTTAAAAGAACATTTAAGGAGGTTGCAGCAACAATCTGATTCAAGGCGAAGAGCTGCTGTAATGGAGATGATGAGGCAGAGAGCTGCAGAAGTTGCCAATAGTGCTGGGTGA 5025 0.4261 MKLQPHTPGGQVPNQAGSQLPGLAQLNGNVLPPQMPNLGGIPHSAINMDPEFLMSRSSMQERICDIILQRQQQPVTEVHRRKVRDLAKRLEEGMLKSARSKEDYMNLETLETRLSNFLRRASMNNHNQQYPQPVGSSPIGTMIPTPGLSNGYQQSSTSFSVGSGANITSTGVQRIGSQMIPTPGFNVSSNHSHMTADSSTNSSAFSGVDSMMVSQPQLQQQKQQHAGGQNSHVIQNLGSQMASGMRSGLLQKPFASSNGAINGGLGLIGNNAANEPGTSDGYASTYVNSPKHLQQNFDQNQQTVVHGDGYGLNNADTFASGNFYASVTSSGSMMNTQNMNSVKLPSIPKTSSMISGHSNLHGMHQAGHIKSQAINPSEKLNFQSSLTSRDDLLHFQQQYQQRPQQFQQPEQYAQQQFQLKLQSQQRQHLVNSDAFSQSQMSANLESRVKSEPGVEHQKEVLSSHVSEQFHMSEMQSQFQQNSSEDCSRGAQHRSFPSGQHDISLSTPQNSQQMLHPLQLVAESRSNFSSLTIGAQPKSVVPNQWPQSQDGNHIPGNISHDQHLQMDFHRSIPGQGEAQCNNLSSDASIIGQAAASRGSAELLDLGSAIKNAHRNQQRWLLFLLHARRCSAPEGRCQERCCSLAQKLCKHIDGCTMRHCPYPRCHHTRVLLHHFINCKDPCCPVCVFVRNYRRTFQLKPQIRPEAESSLPIAVNGSCKSHNIVSPSPRLISKPPLVVETSEDRHSSLKRMKTEHSTHSVNPGNDNSASSFSANCESHVAMDSQSQAYPSAEMSISIKPELPEVKAEVQAHLVHIKLSEMDMDNNNAEKKMSGGEPVTYDEPANLARTESIKNEETGQGKQENVIQPSENVAGTKSGKPKIKGVSLTELFTPEQVRGHITGLRQWVGQSKSKVEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGARIKRNNMYYTMGAGDTRHYFCIPCYNDARSENINVDGTPIPKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIEEVERGERKPLPQSAVLGAKDLPRTILSDQIEQRLYRRLRQERQERARVQGKSYDEVPGADSLVVRVVSSVDKKLEVKQRFLEIFQEENYPIEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSEAQFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVSTGECRSKVTAARLPYFDGDYWPGAAEDLIYQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETISPMKEDFIMVHLQHACTHCCILMVSGNRWVCNQCKKFQLCDKCYEAELKREERERHPINQREKHTLYRVEITDIPADTKDKDDILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICYLDIETGQGWRCEVCPEYDVCNACYQKDGGIDHPHKLTNHPSMADRDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESQCHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANSAG 1674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0003 1674 Pfam Zinc finger, ZZ type 1498 1537 IPR000433 GO:0008270
Lal9g0003 1674 SMART KAT11_2 1091 1388 IPR013178 GO:0004402|GO:0006355|GO:0016573
Lal9g0003 1674 SMART PHD_3 942 1041 IPR001965 -
Lal9g0003 1674 MobiDBLite consensus disorder prediction 472 504 - -
Lal9g0003 1674 ProSiteProfiles Zinc finger TAZ-type profile. 1556 1639 IPR000197 -
Lal9g0003 1674 ProSiteProfiles Zinc finger TAZ-type profile. 606 687 IPR000197 -
Lal9g0003 1674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 993 1041 IPR013083 -
Lal9g0003 1674 Gene3D TAZ domain 1553 1670 IPR035898 -
Lal9g0003 1674 ProSiteProfiles Zinc finger ZZ-type profile. 1496 1549 IPR000433 GO:0008270
Lal9g0003 1674 SUPERFAMILY FYVE/PHD zinc finger 1002 1042 IPR011011 -
Lal9g0003 1674 MobiDBLite consensus disorder prediction 1 36 - -
Lal9g0003 1674 MobiDBLite consensus disorder prediction 755 769 - -
Lal9g0003 1674 Gene3D - 1495 1547 IPR043145 -
Lal9g0003 1674 Pfam Histone acetylation protein 1099 1319 IPR013178 GO:0004402|GO:0006355|GO:0016573
Lal9g0003 1674 MobiDBLite consensus disorder prediction 8 25 - -
Lal9g0003 1674 Pfam PHD-finger 999 1041 IPR019787 -
Lal9g0003 1674 PANTHER ZINC FINGER, TAZ-TYPE-RELATED 149 1674 - -
Lal9g0003 1674 MobiDBLite consensus disorder prediction 847 877 - -
Lal9g0003 1674 SUPERFAMILY RING/U-box 1477 1545 - -
Lal9g0003 1674 CDD PHD_HAC_like 968 1040 - -
Lal9g0003 1674 SMART TAZ_2 1559 1637 IPR000197 -
Lal9g0003 1674 SMART TAZ_2 608 687 IPR000197 -
Lal9g0003 1674 PANTHER CBP/P300-RELATED 149 1674 IPR013178 GO:0004402|GO:0006355|GO:0016573
Lal9g0003 1674 SMART zz_5 1495 1541 IPR000433 GO:0008270
Lal9g0003 1674 SMART zz_5 1375 1419 IPR000433 GO:0008270
Lal9g0003 1674 SUPERFAMILY TAZ domain 1558 1641 IPR035898 -
Lal9g0003 1674 MobiDBLite consensus disorder prediction 735 769 - -
Lal9g0003 1674 ProSitePatterns Zinc finger ZZ-type signature. 1501 1528 IPR000433 GO:0008270
Lal9g0003 1674 MobiDBLite consensus disorder prediction 188 207 - -
Lal9g0003 1674 MobiDBLite consensus disorder prediction 847 871 - -
Lal9g0003 1674 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1058 1494 IPR031162 GO:0004402
Lal9g0003 1674 Gene3D - 1372 1432 IPR043145 -
Lal9g0003 1674 Gene3D TAZ domain 605 692 IPR035898 -
Lal9g0003 1674 SUPERFAMILY TAZ domain 612 691 IPR035898 -
Lal9g0003 1674 MobiDBLite consensus disorder prediction 736 754 - -
Lal9g0003 1674 Pfam TAZ zinc finger 616 684 IPR000197 -
Lal9g0003 1674 Pfam TAZ zinc finger 1566 1636 IPR000197 -
Lal9g0003 1674 ProSitePatterns Zinc finger PHD-type signature. 969 1040 IPR019786 -
Lal9g0003 1674 ProSiteProfiles Zinc finger ZZ-type profile. 1376 1439 IPR000433 GO:0008270
Lal9g0003 1674 SUPERFAMILY RING/U-box 1356 1428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0003 Lal-Chr9 11918 29047 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Lal9g0003 HAT_KAT11 2.9e-30 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0003 K04498 - gmx:100809207 2753.78