LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal8g1582	AGAATTAAAGATAGCTGTTTTTGTGGCTCAACACTCAGGATTCTCACTGCTCAGATAGCTGTTTTTCATGGCCTACAACCTGTTTCACTTGCAGGCCTCTTCATCTCCACAATCCTAGCTACTATTCTTGTCTTCACCATAAGTTTCATTGGAAGGCTCTTAGGTGGTGCTAGATTCAACCCTTCAACCACTATTTCCTTCTACACTGCAGGTCTCAGGCCTGATTCATCACTTGCATCCCTGGCTGTGAGTTTTCCTGCTCAGGCAGCAGGTGGCGCTGTTGGTGCAAAGGGTATCCTTCAAGTGACGCCAACACAGTACAAACACATATTGAAGGGTCCATCTTTGAAGGTTGACTTGCATACTGGAGCTATAGCTGAGGGTGTGTTGACTTTTGCTTTTAACTTGGTTATACTATTTATCATGCTCAAGGGTCCTAAGAACCCACTGGTAAAGGTGTATTTGGTTGTTGTGGCAACTGTAGCTTTGGTTATTCCAGGTTCTCGCTACACAGGGCCTTCTATGAACCCTGCCAATGCATTTGGGTAG	549	0.4517	RIKDSCFCGSTLRILTAQIAVFHGLQPVSLAGLFISTILATILVFTISFIGRLLGGARFNPSTTISFYTAGLRPDSSLASLAVSFPAQAAGGAVGAKGILQVTPTQYKHILKGPSLKVDLHTGAIAEGVLTFAFNLVILFIMLKGPKNPLVKVYLVVVATVALVIPGSRYTGPSMNPANAFG	182

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal8g1582	182	Pfam	Major intrinsic protein	39	182	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lal8g1582	182	PANTHER	AQUAPORIN SIP1-1	7	182	IPR044222	GO:0015250
	Lal8g1582	182	PANTHER	MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER	7	182	-	-
	Lal8g1582	182	Gene3D	Glycerol uptake facilitator protein.	6	182	IPR023271	-
	Lal8g1582	182	PRINTS	Major intrinsic protein family signature	40	64	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lal8g1582	182	PRINTS	Major intrinsic protein family signature	80	99	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lal8g1582	182	PRINTS	Major intrinsic protein family signature	126	144	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lal8g1582	182	PRINTS	Major intrinsic protein family signature	157	179	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lal8g1582	182	SUPERFAMILY	Aquaporin-like	31	182	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal8g1582	Lal-Chr8	20123430	20125857	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal8g1582	10	182	Major Intrinsic Protein MIP	AT3G04090	45.714	4.47e-38	129

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal8g1582	K09875		-	gmx:100797126	214.542