Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1571 ATGGATGATCCTATAGACCAGTTTCCTATAGGAATGCGTGTTCTTGCTGTTGATGATGATCCAACATGCCTCAAGCTTTTGGAGAGACTTCTCAAAAGGTGTCAATATCATGTAACTGTGACTAAAAACGCGATATCGGCGTTGAAGTTGTTGAGAGAAAATAAAGAGAAATTTGATCTGGTAATCAGTGATGTTGTCATGCCAAACATGGATGGATTGAAGTTGCTTGAGTTGGTAGTACTTGAGATGGACTTACCTGTCATAATGTTGTCTGGAAATGATGATCCAAAGATGGTGATGAAGGGAATTACTCGTGGAGCTTGCGATTATCTGCTGAAACCGATTAGAATTGAAGTGCTAAAGAACATATGGCAGCATGTAATAAGGAAGAAGAATAAGAATAAGATTGACTTAAAGGAGCAGAACAAAACTAACAACCAAGACATACCTGATTCTGGTCTTTGCAATGCAGTAGAATCTGCAACAACAGGAGATTCAGATCAAAATGAAAAACAAACCAGAAAAAGGAAGGATCAAGATGAAGATGAGTACGATGATGGTGATGGTGATGATAATGAGGATCCATCAAACGGGAAGAAGGCTCGAGTTGTTTGGTCTGTGGAGCTGCATCGCAAGTTTGTTTCTGCTGTTAATCAATTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACTAGGGAGAATGTTGCCAGCCATCTTCAGAAATATAGACTTTATTTGAAAAGAATTAGCTGTGTGGCAAACAAACAGGCTAGTATGGTGGCAGCGTTAGGCAGCGCCGAATCATCGTATTTGAGAATGGGTTCTCTGAGTGGTGCTGGAGGATTTCAAACATTCAATGGTTCTAGACAAATTCCTCATAACAATTCTGCTTTCAAATCCTTTCCCACCAGTGGGATGATGATTGGTAGATTGAACACTCCTTCTACTCTTTTTGGAACTCATCAGTTGGCCCAAAATTTAAACAACTCTGGAAATGATCATCTTAAGTTTCAATCAGCCGTTGGCTGTGATTACCTGAACGATGTTCGAGGAATTCCAACATCTGCTATCCTTGTTCAAAACCTGACCAATGTTAATGATGCTAAAATACCTTTTCCTATGTTGAATAATAAACTCACAGATCAAATGCCGAAAGTAACAACGGGTTGTGCACCTTCTCCAGTTTTAGGTATCTCAAACAATGGCTTGATGTTGGAATCAAATCCTCAGGACACACAAGAAAATTCAGAATTTCCATTCTCTTTGGTGAATAATAGTAGTTGTAATGATATTTGGTCAAGTGATGTACATTCATCTAGGACACTTTCTTTGCCTCCAAGTCAATGTTTTAGACAGGCTCCTGAAGTTAACATGATTTCATTGTCCAATCAGTGCCCTGATTCATTCACAGATATGCACTCTCAAAACAACAATGTTTCGTTTCAATGGTGGGATGATGCAAATGTTATTGGCAGCTCTATAAACTCTCTGACTCCTATGAGTGATGTTGTTGATCCACAAGGCCATAATTCAACTAACTCAACCTTCTTCAATTTTTCTAACCCCTCACAAATGAAGCATGACAGGGTCATTGAACTGACCGGAGATTACTCATTGAAAACACATCAGGTGTATACCATGAACCACATCACTCGAAAGTCTTAG 1692 0.3895 MDDPIDQFPIGMRVLAVDDDPTCLKLLERLLKRCQYHVTVTKNAISALKLLRENKEKFDLVISDVVMPNMDGLKLLELVVLEMDLPVIMLSGNDDPKMVMKGITRGACDYLLKPIRIEVLKNIWQHVIRKKNKNKIDLKEQNKTNNQDIPDSGLCNAVESATTGDSDQNEKQTRKRKDQDEDEYDDGDGDDNEDPSNGKKARVVWSVELHRKFVSAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANKQASMVAALGSAESSYLRMGSLSGAGGFQTFNGSRQIPHNNSAFKSFPTSGMMIGRLNTPSTLFGTHQLAQNLNNSGNDHLKFQSAVGCDYLNDVRGIPTSAILVQNLTNVNDAKIPFPMLNNKLTDQMPKVTTGCAPSPVLGISNNGLMLESNPQDTQENSEFPFSLVNNSSCNDIWSSDVHSSRTLSLPPSQCFRQAPEVNMISLSNQCPDSFTDMHSQNNNVSFQWWDDANVIGSSINSLTPMSDVVDPQGHNSTNSTFFNFSNPSQMKHDRVIELTGDYSLKTHQVYTMNHITRKS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1571 563 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 256 IPR017930 -
Lal8g1571 563 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Lal8g1571 563 PIRSF RR_ARR_type-B 2 560 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lal8g1571 563 MobiDBLite consensus disorder prediction 168 182 - -
Lal8g1571 563 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Lal8g1571 563 MobiDBLite consensus disorder prediction 145 167 - -
Lal8g1571 563 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Lal8g1571 563 Gene3D - 197 259 - -
Lal8g1571 563 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 541 IPR045279 GO:0009736
Lal8g1571 563 SMART REC_2 12 124 IPR001789 GO:0000160
Lal8g1571 563 Gene3D - 12 186 - -
Lal8g1571 563 CDD REC_typeB_ARR-like 14 128 - -
Lal8g1571 563 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 6 541 - -
Lal8g1571 563 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Lal8g1571 563 SUPERFAMILY CheY-like 11 132 IPR011006 -
Lal8g1571 563 MobiDBLite consensus disorder prediction 138 199 - -
Lal8g1571 563 SUPERFAMILY Homeodomain-like 199 257 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1571 Lal-Chr8 20031602 20035036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1571 3 457 Response Regulator Gene Family AT2G25180 50.107 3.72e-116 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lal8g1571 Response_reg 5.9e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1571 - K14491 lang:109358042 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1571 8 20031602 20035036 Lal8g1571 8 20031602 20035036 ECH
Lal8g1571 8 20031602 20035036 Lal17g0210 17 1286464 1290820 PCT
Lal8g1571 8 20031602 20035036 Lal21g0313 21 2090135 2094165 PCT
Lal17g0210 17 1286464 1290820 Lal8g1571 8 20031602 20035036 PCT
Lal21g0313 21 2090135 2094165 Lal8g1571 8 20031602 20035036 PCT