Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1562 ATGGATCATTCTCCTCAATCTTCTTTAGACAACAACAAACATAAACAAAAACAAGAAGAAGAAGAAGAAGAAGGAGGAGAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGATGAAGAAGGAGAAGGAGAAGGAGAAGAAGCTGAAGAAGGAGAAGGAGAAGAAGAAGATGAAGAAGGAGAAGGAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGGGGGAACTTCTTTATCTGATTCTCCTCAACTTCAAGCTAGTCCAAAGCACCATGGCGTTCTTAGACGATGTTTACAATTTGGGATGGACAACATGAAGAGATCCTTAATTGCTTCAAATATGGATATGGATATGGATACCGCTGATGCCTTCATCTCCGAGTCTCTTAGCTTGGCAGAACCTACTTCTGTAAATCATGCAAGTGGAAATTCTGAGGAATTCAACCGATCTAGACCCACCAAGAAAAATTATTGTGATTGTTTTGCTGCTGGAATCCATTGTTCCGACCCATGTTCTTGCCAAACCTGCTTAAATAGACAAGAGTATCAAGATAATGTTCTTGAGGCAAGGAGGAAAATCAAATCACACAATCCATTTGCATTTCTTCCCAAAGTTGTACAGCATACAACTGATATTCTGTCAAATAATATGAAATGGATTGATAGTTTAATGTGCCCTTTGCAGGAGGGTGCGAATCTGACAACACCATCATCGGCGAGGCATAAAAGGGGCTGCAATTGCAAAAGGTCAATGTGTCGGAAAAAATATTGTGATTGTTATCAGGCTAAAGTTGGATGTTCCAGTGGATGTCGATGTAAGGGATGTGAGAATGCCTATGGCAGGAAAGAAGATTATGTTCCAATGGAACATGCTTTGAGTAAAGAAACTGGACATGGTAACAACACATTTGATAACAAACTGGACATGGTAGTAAGAAAGACAGAGTTGTATGACCTACACCGCCTCTCTCCGATAACACCCTCAGACCAAGGAAAGGAGGCTGCAAACCTACCAGAAATGGACTCTTATGAAAGGCAAATGGATCAATTATCACCAAAATGGAAAGATATTCCACAATGGCGACTCTCCTATGGACCGATGAGCCACTTAGATACTCCAAGGACTGGGATATGTAAAACACAATGTGTAAAACCAAATTCACCTAACCAAAAGAGACTTTCTCCTCCCCATGCTCATAGTCATCTAAATGCACTTGGTGCTGCCTTCAGAAGTGAAAGGAGATTTGTTGTCAAAGCTCTACCTTTTTTCCCACCATTGATTCCTTCCACTGATTCCAAAAGCAATGACAATGAGGATTCG 1374 0.4105 MDHSPQSSLDNNKHKQKQEEEEEEGGEEEEGEGEGEGEGEGEGEGEGEGEGEGEEDEEGEGEGEEAEEGEGEEEDEEGEGEEEDEEEEEEEGGTSLSDSPQLQASPKHHGVLRRCLQFGMDNMKRSLIASNMDMDMDTADAFISESLSLAEPTSVNHASGNSEEFNRSRPTKKNYCDCFAAGIHCSDPCSCQTCLNRQEYQDNVLEARRKIKSHNPFAFLPKVVQHTTDILSNNMKWIDSLMCPLQEGANLTTPSSARHKRGCNCKRSMCRKKYCDCYQAKVGCSSGCRCKGCENAYGRKEDYVPMEHALSKETGHGNNTFDNKLDMVVRKTELYDLHRLSPITPSDQGKEAANLPEMDSYERQMDQLSPKWKDIPQWRLSYGPMSHLDTPRTGICKTQCVKPNSPNQKRLSPPHAHSHLNALGAAFRSERRFVVKALPFFPPLIPSTDSKSNDNEDS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1562 458 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 173 456 IPR044522 GO:0003700
Lal8g1562 458 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 173 456 - -
Lal8g1562 458 MobiDBLite consensus disorder prediction 1 21 - -
Lal8g1562 458 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 260 296 IPR005172 -
Lal8g1562 458 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 173 197 IPR005172 -
Lal8g1562 458 SMART CXC_2 258 299 IPR033467 -
Lal8g1562 458 SMART CXC_2 166 200 IPR033467 -
Lal8g1562 458 MobiDBLite consensus disorder prediction 22 94 - -
Lal8g1562 458 ProSiteProfiles CRC domain profile. 162 298 IPR005172 -
Lal8g1562 458 MobiDBLite consensus disorder prediction 1 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1562 Lal-Chr8 19954918 19956956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1562 116 446 CPP Transcription Factor Family AT4G14770 31.383 9.14e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lal8g1562 TCR 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1562 K21776 - gmx:547664 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1562 8 19954918 19956956 Lal8g1562 8 19954918 19956956 ECH
Lal8g1562 8 19954918 19956956 Lal25g1069 25 13958953 13964716 LSH