Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1557 ATGTCTGGTTATGCGATGATGGGAGAATCAAGTTCATGGGGTAGTGCACTTGTTAGGATCTCTCCTTATACCTTCTCCGCTCTCGGAATCGCAATCTCTATCGGCGTTTCTGTTCTCGGCGCTGCTTGGGGGATTTATATAACTGGTAGTAGTTTGATCGGTGCTGCAATCAAGGCTCCACGAATCACTTCCAAGAATCTAATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATCGTGGCTATCATTCTTCAAACAAAATTAGAAAGTGTGCCATCAGCAAATCTCTATGCCGCTGAGTCTCTTAGAGCTGGATATGCAATCTTTGCATCTGGAATTATTGTCGGCTTTGCAAACCTTGTTTGTGGGTTATGTGTAGGAATAATCGGAAGCAGTTGTGCATTATCTGATGCTCAAAACTCCTCTCTCTTTGTGAAGATTCTTGTGATTGAGATCTTTGGTAGTGCACTTGGACTATTTGGAGTTATTGTTGGAATTATTATGTCAGCTCAAGCAACATGGCCAACAAAAGTTTAG 546 0.4158 MSGYAMMGESSSWGSALVRISPYTFSALGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPSANLYAAESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1557 181 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Lal8g1557 181 Gene3D - 23 178 IPR035921 -
Lal8g1557 181 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Lal8g1557 181 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Lal8g1557 181 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Lal8g1557 181 SUPERFAMILY F1F0 ATP synthase subunit C 105 172 IPR035921 -
Lal8g1557 181 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Lal8g1557 181 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lal8g1557 181 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lal8g1557 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lal8g1557 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lal8g1557 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lal8g1557 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1557 Lal-Chr8 19899953 19902954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1557 1 180 Primary Pumps ATPases(2) AT2G25610 92.222 2.47e-112 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1557 K03661 - tcc:18588964 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1557 8 19899953 19902954 Lal8g1557 8 19899953 19902954 ECH