Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1549 ATGGAGCGGCCAGGGCTGGAGAGCGTTAATGGCATTCAGCATGTTATTGAAATAGCTGGGCGTACTGACGCTTCCGCTACTGCCTCACGTGATAGACATATCGATGGCATTGATATACCATGGCAAGAAGACAGACATAGTGGTGCAAGGTTAACTGTTTCTCAGTCGTCAGTTTTAACATCTAATGGGTCAAATACTAGGAATTCTTTGTCCGTAAGTCGAGGGGATACACGTCAGCATAGGAATCCAATGCAATCTGTATTATGGATATCTGTTGAGTTAGTCCTCTTAGTAAGCCAGATTATTGCATCTATCGTTGTTTTGTCTTTGTCGAGGGATGAACATCCACATACCCCACTATTTCAATGGATTGTGGGTTATGCAATTGGATGTGCTGCTACTCTCCCTCTAATTTGTTGGCGGTATTATCACCATAACCATTTTCGGGAGCAAGATTCACCTCAATCACGTCAAACGTCTCCTCGGATTAATGATGCTTCAGGGACATTTCTTTCCAGTTCCAGAACTGATGGAGGAGAAGATAGTCAGCCTGCTGTTGTATCATCCAGAAGCAATCAAGCTTCAGTGTTGATGAATAGAAGAATGAAGTCACTGATGGAATACTTCAAAATATCCCTAGATTGCTTTTTTGCCATATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCCTCTGCTGCTGATGCTCCTAATATATACAGGTTATGTATAGTGTTTCTTGCCTTTTGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGTTGTTGTTTCCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGAGCTGACACAAAACACAGGAGCAACTTCTGAATCCATTAATGCTCTGCCAACTTTCAAGTTCAAGATGAAGAAAAATAAAAGAATTGGTGAAAGCAACTCGGCTACTGCTGGAGGTGGAATTGTCGCTGCAGGAACTGAAAAGGAGCGTGTGATCACCAGAGAAGATGCTGTTTGCTGCATCTGCCTTGCAAAGTATGAAAATAATGATGAGCTGAAAGAATTGCATTGTTCTCATCTTTTCCACAAAGAGTGTATAGACAAGTGGCTGAAGATAAATGCGTTATGTCCTCTTTGCAAGAGTGAGGTTGGCGAGAAGTTACAAAGATCGACCGAGGAAGATGCTAGCCAACAACAGCTTTAG 1206 0.4212 MERPGLESVNGIQHVIEIAGRTDASATASRDRHIDGIDIPWQEDRHSGARLTVSQSSVLTSNGSNTRNSLSVSRGDTRQHRNPMQSVLWISVELVLLVSQIIASIVVLSLSRDEHPHTPLFQWIVGYAIGCAATLPLICWRYYHHNHFREQDSPQSRQTSPRINDASGTFLSSSRTDGGEDSQPAVVSSRSNQASVLMNRRMKSLMEYFKISLDCFFAIWFVVGNVWIFGGHSSAADAPNIYRLCIVFLAFCCIGYAMPFILCSTICCCFPCIISILGVREELTQNTGATSESINALPTFKFKMKKNKRIGESNSATAGGGIVAAGTEKERVITREDAVCCICLAKYENNDELKELHCSHLFHKECIDKWLKINALCPLCKSEVGEKLQRSTEEDASQQQL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1549 401 SUPERFAMILY RING/U-box 331 387 - -
Lal8g1549 401 MobiDBLite consensus disorder prediction 59 78 - -
Lal8g1549 401 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 400 - -
Lal8g1549 401 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Lal8g1549 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 391 IPR013083 -
Lal8g1549 401 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 400 - -
Lal8g1549 401 SMART ring_2 340 380 IPR001841 -
Lal8g1549 401 Pfam Ring finger domain 340 381 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1549 Lal-Chr8 19822941 19827043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1549 42 386 C3H Transcription Factor Family AT1G80400 49.435 1.03e-127 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1549 - - gmx:100778728 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1549 8 19822941 19827043 Lal8g1549 8 19822941 19827043 ECH
Lal8g1549 8 19822941 19827043 Lal25g1077 25 14095970 14103779 LSH
Lal8g1549 8 19822941 19827043 Lal10g0039 10 448424 455864 LSH