Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal8g1548 | ATGGGAGAGGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTGGAGTGCTATGGCATGAACCATATGACTGAGAATGATGTACATACTCCAAAATCAAATGAGCCCATGCCTGAAGAAGAATCAAATCAATCAACAGATGACATTAATATCAATGACTTGCAAGAGAAAGGGTACATGGAGCATGGATGTGAACATTACCGGAGAAGATGCCTGATCAGGGCCCCCTGTTGCAATGAGATTTTTGACTGTCACCATTGTCACAATGAAGCAAAAAATGATACCAACATTGATCACAAGCATAGGCACAACATTCCCCGCCACCAAGTCAAACAGGTGATATGTTCACTTTGTGGGACTGAGCAAGAGGTTCAGCAAAACTGTATTAATTGTGGTGTTTGTATGGGAAAATACTTCTGTGAGACATGCAAACTCTTTGATGATGATATATCTAAACAGCAGTACCACTGCGGTGACTGTGGAATTTGCAGAACTGGAGGAAGGGAGAATAATTTCCATTGCGATAAGTGTGGTTGTTGCTATTCAATTCTGCTGAAAAACAGTCACCCTTGCGTGGAACGAGCAATGCATCATGATTGCCCCATTTGTTGTGAGTATTTATTTGAAACCACAAAAGATATCCTTGTTCTGCCCTGTGGACATACCATCCATAAGAGTTGCCTGGAAGAAATGAGAAAGCATTTACAATATGCATGTCCTCTATGCTCTAAGTCCATTTATGATATGTCCAAGGTCTGGGAGAAACTTGACCTGGAGATTGCTGCTACACCAATGCCTCCACCATATGGAAATAAAATGGTTTCAATCCTGTGCAATGATTGTAGCAAATATTGTCACAATGTTAAATTCCATTTTGTGGGACATAAGTGTTTGCACTGCAATTCCTACAACACAAGACAGACAAGTGGGTGA | 930 | 0.414 | MGEVAVMHSEPLQLECYGMNHMTENDVHTPKSNEPMPEEESNQSTDDININDLQEKGYMEHGCEHYRRRCLIRAPCCNEIFDCHHCHNEAKNDTNIDHKHRHNIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCETCKLFDDDISKQQYHCGDCGICRTGGRENNFHCDKCGCCYSILLKNSHPCVERAMHHDCPICCEYLFETTKDILVLPCGHTIHKSCLEEMRKHLQYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYGNKMVSILCNDCSKYCHNVKFHFVGHKCLHCNSYNTRQTSG | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal8g1548 | 309 | Pfam | CHY zinc finger | 63 | 144 | IPR008913 | GO:0008270 | |
| Lal8g1548 | 309 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 22 | 309 | - | - | |
| Lal8g1548 | 309 | SUPERFAMILY | RING/U-box | 197 | 245 | - | - | |
| Lal8g1548 | 309 | MobiDBLite | consensus disorder prediction | 24 | 45 | - | - | |
| Lal8g1548 | 309 | PANTHER | CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN | 22 | 309 | - | - | |
| Lal8g1548 | 309 | Gene3D | - | 270 | 309 | - | - | |
| Lal8g1548 | 309 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 261 | IPR013083 | - | |
| Lal8g1548 | 309 | ProSiteProfiles | Zinc finger RING-type profile. | 199 | 242 | IPR001841 | - | |
| Lal8g1548 | 309 | ProSiteProfiles | Zinc finger CHY-type profile. | 56 | 132 | IPR008913 | GO:0008270 | |
| Lal8g1548 | 309 | SUPERFAMILY | Zinc hairpin stack | 135 | 192 | IPR037275 | - | |
| Lal8g1548 | 309 | Pfam | Zinc-ribbon | 247 | 305 | IPR039512 | - | |
| Lal8g1548 | 309 | SUPERFAMILY | CHY zinc finger-like | 60 | 134 | IPR037274 | GO:0008270 | |
| Lal8g1548 | 309 | SMART | ring_2 | 199 | 241 | IPR001841 | - | |
| Lal8g1548 | 309 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 134 | 198 | IPR017921 | - | |
| Lal8g1548 | 309 | Pfam | Ring finger domain | 198 | 241 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal8g1548 | Lal-Chr8 | 19812587 | 19818472 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal8g1548 | 32 | 305 | C2H2 Transcription Factor Family | AT3G18290 | 36.042 | 4.10e-52 | 182 |