Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1528 ATGAATATGGATATTCTCCAATCCCCAACTCTTGTTCGTTTCTTCCCATTACAAAAAACTAGCACAAACACTACTTTCATCCATTTGGGTCATCACCAATATCATCGTGGAATCAGAATAGATAATGTACCCACCTCACTCACCCACACCCACCACCTGTTCGATGAAATTCCCCTTTGGGATACCTTTGCTTGGAACACCCTCATTCAAACCCATCTCACAAATAATGACTTTACTCATGTTCTCTCGACCTACATCCAAATGCTTCAACGTGGTGTTTCCCTTGATAAGTATACACTTCCCCGCGTTGTCCATGCTTCTCGTCTCATGGGTGATTTGTGCATTGGAAAACAGGTTCATGGTCATGCTGTCAAACTCGGCTTCTCGTCTGATCAATACGTTGTCACTGCGTTGATTGAGATGTATGGCCATTTGTGTGGTCTTGATATGGCTCAAACAGTGTTCCACAAGTCGAAGCCGAATTTGATTTCTTGGACCCTTCTTGCAAGGTTGTATATTGTTGGAGGGAAGCCGGGTTTGGTGATTGATTTGTTTTTGAAGATGGTGGAGAAGGAGAAGTGTAATGTTGATCCTGTGGCATTGGCAACTGCGTGCAGGGCTTGTGGGCTAATAAAATCCTTGCAGCATGGGAGGAAGGTGCATGAGATTGCCAGGGAATGTAGGTTGGAGTTTGAAGTCTTAGTGAGTAACTCGTTGTTGAAAATGTATATTGATTGCGATAGTGTAGATGATGCCAGATTGTTGTTTGATCGGATGCCCTGCAAGGATGTCATATCATGGACATCAATGATCCGCGGTTATGTGAAAAACTTAGGAGGATTCAATGAGGCTTTCAAATTGTTCCGGCAGATGAACTTGGACGGATTGAGACCAGACTCGCTGTCGATCTCTACCATTCTTCCTGCATGTGGAAGAATTGCTTCACATAATCATGGTAGAGAAATTCATGGCTACTTACTTAGAAACAGGATTCACTTTAACCAGAAAGTCAAGAATGCACTTATGGATATGTATGTGAAATCAGGAGCTATCACTTCTGCTTCAAATATTTTTGCCGAAATTAATGAAAAGGATACTATTTCATGGACCGTGATGATATTGGGATATAGTTTACATGGACAAGGAAAGCTTGCAGTTACTTTGTTTAAACAGGTTGAGAAGAAATTAAAGGTACATGTTGATGACACAACCTATGCTGCCTTACTTCATGCTTGCAGCACCGCACGCATGGCTGAGGAAGGAAAGATTTACTTCGACTGCATTAGGGCGCCCACGGTGGCTCACTGTGCTCTAAAAGTGGCTCTGCTAGCACGGTGTGGACTATTTCATGAGGCGAGGATCTTTATCTGTGAACACAAGATCGGAAAGCATCCCGAGGTTGTGAGAAAAGTGCTAGAAGGGTGTAGGATTCATGGTCAATATACTTTAGGCAAGCAAGTCATTGATCAGCTTTGTGAGTTGGAACCTCTAAATGCTGAGAACTATGTGCTACTTCAGAATTGGTATGCATGTGGTGCAAAATGGCACATTGTGGAGAAGTTAAGGGAGACAATGAAAGACATGGTTTTGAAACCGAAAAAGGCTTTAACTTGGACAATGTTAAGGAATAAAGTTCATGTTTTCGGAACTGGGGATGTAACTCATCCAAGATCATTGAAAATATATTCACAATTAGAGGGTTTCATGAAGGAAATGAGAGCAGAAGGATTTGAACCAAAATGGGATTTCAGTCTCCATGATGTAGATGAAGAAAGAGAGTGCATTCAGATTGGCCACAGTGAACTCTTGGCACTTTCGTTTTCTCTCATCAGCTCACAGGTTGGACCTATCCGACTTGCGAAAAATTCGACAGTGTGTAATGGCTGCCATGATTTTGCAAAGTTTGTATCCAAGAGAATGAGAAGAGAAATCATCCTGAAGGACCCAAATTTCTTTCATCATTTCAAAGATGGAGTTTGTTCATGTCAGGATTTTTGGGTTCCGACGACGGCGGCGATGTTTTCCGGCTCCCAATTCGACGCCACCACCGCTTTCTCTGGCGGCGGATTCGTCTCCTCTCAATCTACCCAACTCAACGATTCATCTCCCGCTCACTTCACAAATCGTGAAAGTCATGGTTTGATTCCAGTGACGGTGAAGCAGATAAGTGAAGCTTCTCATTCTGGTGATGAAAAATCAAGTTTTGTTATCAACGGTGTAGATCTCACTAATGTAACCTTGGTTGGAATGGTGTTTGAGAAAGTTGAGAGAAACACCGATGTTAATTTTGTTTTAGATGATGGAACAGGGCGAATCAAATGCCGGAGATGGTACTTCATGCATCTTAATTCTGAATTTCTTTTTGATCGTGTAATTAGGGTCAATGAGACATTTGACTCAAAGGAAATGGAAGAAATACAGGATGGTATGTATGTTCGTGTTTATGGCCATTTGAAGAGTTTTCAAGGTGTAAGGCAACTTGTTGCCTTTTCTGTCAGGCATGTGCCTGTGACGAATTTTGATGAGATCTCTTTTCACTTCATTGATTGCATTCATAACCACCTCCGCACCAAATTAAAGGTTGAAGGAATCACTCATGCACATCCTGACTCATCTTTTAACACTCCTGTCAGAAATGCATCAAATGTATCCCATGCACCATCATCAATTCCAGCATATGCACAATATAGTGTGGATGGACTCAAAGATTGTGATAATCTGGTTATAGACTATATGCAGCAGCACTCAGACATGTCAGATGAACGAGGAATACACGTTGATGAATTATCTCGAGAACTTAAGCTTCCATTGGACAAGATCATGTTGTCGCTGAGGACTCTTGGAGATGATGGTTTAGTATATTCCACCATAGATGACTTCCATTACAAGCAAGCTTGA 2898 0.4186 MNMDILQSPTLVRFFPLQKTSTNTTFIHLGHHQYHRGIRIDNVPTSLTHTHHLFDEIPLWDTFAWNTLIQTHLTNNDFTHVLSTYIQMLQRGVSLDKYTLPRVVHASRLMGDLCIGKQVHGHAVKLGFSSDQYVVTALIEMYGHLCGLDMAQTVFHKSKPNLISWTLLARLYIVGGKPGLVIDLFLKMVEKEKCNVDPVALATACRACGLIKSLQHGRKVHEIARECRLEFEVLVSNSLLKMYIDCDSVDDARLLFDRMPCKDVISWTSMIRGYVKNLGGFNEAFKLFRQMNLDGLRPDSLSISTILPACGRIASHNHGREIHGYLLRNRIHFNQKVKNALMDMYVKSGAITSASNIFAEINEKDTISWTVMILGYSLHGQGKLAVTLFKQVEKKLKVHVDDTTYAALLHACSTARMAEEGKIYFDCIRAPTVAHCALKVALLARCGLFHEARIFICEHKIGKHPEVVRKVLEGCRIHGQYTLGKQVIDQLCELEPLNAENYVLLQNWYACGAKWHIVEKLRETMKDMVLKPKKALTWTMLRNKVHVFGTGDVTHPRSLKIYSQLEGFMKEMRAEGFEPKWDFSLHDVDEERECIQIGHSELLALSFSLISSQVGPIRLAKNSTVCNGCHDFAKFVSKRMRREIILKDPNFFHHFKDGVCSCQDFWVPTTAAMFSGSQFDATTAFSGGGFVSSQSTQLNDSSPAHFTNRESHGLIPVTVKQISEASHSGDEKSSFVINGVDLTNVTLVGMVFEKVERNTDVNFVLDDGTGRIKCRRWYFMHLNSEFLFDRVIRVNETFDSKEMEEIQDGMYVRVYGHLKSFQGVRQLVAFSVRHVPVTNFDEISFHFIDCIHNHLRTKLKVEGITHAHPDSSFNTPVRNASNVSHAPSSIPAYAQYSVDGLKDCDNLVIDYMQQHSDMSDERGIHVDELSRELKLPLDKIMLSLRTLGDDGLVYSTIDDFHYKQA 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1528 965 CDD RPA2_DBD_D 744 855 - -
Lal8g1528 965 Pfam PPR repeat 367 394 IPR002885 -
Lal8g1528 965 Pfam PPR repeat 64 93 IPR002885 -
Lal8g1528 965 Pfam PPR repeat 163 191 IPR002885 -
Lal8g1528 965 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 61 95 IPR002885 -
Lal8g1528 965 Pfam Replication protein A C terminal 870 959 IPR014892 -
Lal8g1528 965 Gene3D Tetratricopeptide repeat domain 41 157 IPR011990 GO:0005515
Lal8g1528 965 Gene3D Tetratricopeptide repeat domain 158 260 IPR011990 GO:0005515
Lal8g1528 965 Pfam E motif 482 533 IPR046848 -
Lal8g1528 965 Pfam OB-fold nucleic acid binding domain 745 832 IPR004365 GO:0003676
Lal8g1528 965 Gene3D - 895 965 IPR036388 -
Lal8g1528 965 SUPERFAMILY Nucleic acid-binding proteins 714 856 IPR012340 -
Lal8g1528 965 Pfam DYW family of nucleic acid deaminases 576 666 IPR032867 GO:0008270
Lal8g1528 965 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 298 IPR002885 -
Lal8g1528 965 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 659 - -
Lal8g1528 965 Pfam PPR repeat family 262 310 IPR002885 -
Lal8g1528 965 SUPERFAMILY "Winged helix" DNA-binding domain 899 963 IPR036390 -
Lal8g1528 965 Gene3D - 710 859 IPR012340 -
Lal8g1528 965 PANTHER OS07G0578800 PROTEIN-RELATED 3 659 IPR045215 GO:0003723|GO:0009451
Lal8g1528 965 Gene3D Tetratricopeptide repeat domain 278 431 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1528 Lal-Chr8 19600247 19607836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1528 45 666 Glycoside Hydrolase AT3G49170 30.878 5.93e-96 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1528 - - lang:109357688 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1528 8 19600247 19607836 Lal8g1528 8 19600247 19607836 ECH
Lal8g1528 8 19600247 19607836 Lal25g1089 25 14208355 14212480 LSH