Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1527 ATGGCGGGATTAAGATGCAACGCTTGTAACAAAGAATTCAATGATGATTTTGATCAAAAGGATCATTACAAGTCTGAGTGGCATCGCTACAATCTCAAGCGCAAGGTGGCTGGAGTTCCTGGGGTGACAGAAGCACTATTTATGGCTAGACAAACTGCACTTGCTCAAGAGAAAAACAAATCGAGTGAAACCCCTATGCTTTATAGCTGTGGCCTTTGTGGGAAGGGATATAAGAGTTCTAAGGCTCATGCCGAGCATCTTAAATCTCGTGGTCATATAATGCGAGCTTCTGAAGGAAATCATTCTGATGAGAAGGCAATAATCAAGCCGATTCAACAACGTGTTGTGAATAGGCCTCCTCCTAGAAGAGAGGCGGTGGATAACTCTGAAAATGAAGAAGACGAAGAAGAAAGTGAAGATGAATGGGTGGAAGTTGATCCTGAAGAGGATTTGATTAATGATGCTTCGAAGTCTTTTAAGGGTTTGAATGTGAACGAGCATGCCGAGAATGATGATATGGATGAAGAAGAAGAAGATGATGATAGTTTTGAGGAGTTGGATCCATCGTGTTGCTTTATGTGTGATCAAGAGCTCAAAACAATAGAAAGCTGCATGGTTCACATGCACAAGCACCATGGGTTCTTTATTCCGGATGTTGAGTATTTGAAGGATCCAAAAGGTCTTCTCACTTATCTTGGCCTTAAGGTCAAAAGGGATTACATTTGTCTCTACTGCAACGATAGATGTTATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGCAGCAAAAGGTCATTGTAAAGTGCATTACGGTGATGATGATGATGAAGAGGAAGTAGAGTTGGAAGAATTCTATGATTACAGTAGCAGTTATGTGGATGAACAAGGGAAGCAACTGGTTGCGTCAGGTGATTTGGCTAACGATGTTGAACTCGGTAGTGCTGGATCTGAGCTCATAATCACTAGGAGATCTGATGATAGAGTATCAACCCGAACACTTGGTTCCCGTGAATTTTTGCGTTATTATCGTCAGAAACCTCGTCCTTCTCCAACTAATAATGTAGCCATCACTGCTGCATTGGCTTCAAGGTACAGAAGCATGGGTTTGGCCACAGTCCAATCAAGGGAGCAAATGGTTAGGATGAAAGTCCTAAAGGAAATGAGTAGGACAGGCGTAGAGATTATGCGCAGCAAGATGGGGATGAAGAGTAATGTCATTCGGAACCTGCCAAAGAATTGCACCTATTAG 1254 0.425 MAGLRCNACNKEFNDDFDQKDHYKSEWHRYNLKRKVAGVPGVTEALFMARQTALAQEKNKSSETPMLYSCGLCGKGYKSSKAHAEHLKSRGHIMRASEGNHSDEKAIIKPIQQRVVNRPPPRREAVDNSENEEDEEESEDEWVEVDPEEDLINDASKSFKGLNVNEHAENDDMDEEEEDDDSFEELDPSCCFMCDQELKTIESCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYICLYCNDRCYPFSSLEAVRKHMAAKGHCKVHYGDDDDEEEVELEEFYDYSSSYVDEQGKQLVASGDLANDVELGSAGSELIITRRSDDRVSTRTLGSREFLRYYRQKPRPSPTNNVAITAALASRYRSMGLATVQSREQMVRMKVLKEMSRTGVEIMRSKMGMKSNVIRNLPKNCTY 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1527 417 PANTHER ZINC FINGER PROTEIN 622 1 417 IPR040025 -
Lal8g1527 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 106 IPR013087 -
Lal8g1527 417 PANTHER ZINC FINGER PROTEIN-RELATED 1 417 - -
Lal8g1527 417 MobiDBLite consensus disorder prediction 110 184 - -
Lal8g1527 417 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Lal8g1527 417 SMART c2h2final6 4 28 IPR013087 -
Lal8g1527 417 SMART c2h2final6 68 92 IPR013087 -
Lal8g1527 417 SMART c2h2final6 189 211 IPR013087 -
Lal8g1527 417 SMART c2h2final6 240 267 IPR013087 -
Lal8g1527 417 SUPERFAMILY beta-beta-alpha zinc fingers 4 36 IPR036236 -
Lal8g1527 417 MobiDBLite consensus disorder prediction 169 184 - -
Lal8g1527 417 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Lal8g1527 417 MobiDBLite consensus disorder prediction 129 149 - -
Lal8g1527 417 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
Lal8g1527 417 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Lal8g1527 417 Pfam C2H2 type zinc-finger (2 copies) 191 292 IPR041661 -
Lal8g1527 417 SUPERFAMILY beta-beta-alpha zinc fingers 174 250 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1527 Lal-Chr8 19595912 19599691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1527 1 417 C2H2 Transcription Factor Family AT4G31420 62.796 5.48e-179 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal8g1527 zf-C2H2_2 5.2e-26 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1527 K14816 - gmx:100796317 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1527 8 19595912 19599691 Lal8g1527 8 19595912 19599691 ECH
Lal8g1527 8 19595912 19599691 Lal25g1091 25 14226689 14230263 LSH