Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1480 ATGGCCTCTTCTAGCTACTCAAATTCTCCATGTGCTGCATGCAAATTTTTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCCCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCAAATGTTCACAAAATATTTGGTGCAAGCAATGTAAGTAAGCTTCTAAATGAAGTTCAACCTCATCAAAGAGAAGATGCAGTGAACTCTATGGCCTATGAAGCTGAGGCAAGAATAAAAGATCCTATCTATGGTTGTGTTGGTTCCATTTCTATGCTCCAAAGACAAGTGATTAGGCTTCAAAAGGAACTTGATGCTACAAATGAAGATTTAATGCAATATACTTGCAATGAAATAATACCAAGTAATACTCATCAAGATAATGGTAGAAGAATAATGGGTAATAATAATGAAGGAGTAGGAGTAGGAGAAGGTTCTTCTCTTGGTTCTGGATTTTATTATCCTTCACCTTGGAATAGTGATCTTGGTTATCATAGAGGAGGTGACAATAATATGTGA 516 0.3643 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSMAYEAEARIKDPIYGCVGSISMLQRQVIRLQKELDATNEDLMQYTCNEIIPSNTHQDNGRRIMGNNNEGVGVGEGSSLGSGFYYPSPWNSDLGYHRGGDNNM 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1480 171 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lal8g1480 171 Coils Coil 89 116 - -
Lal8g1480 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 161 - -
Lal8g1480 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 161 - -
Lal8g1480 171 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1480 Lal-Chr8 19063366 19063881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1480 4 114 AS2 family AT3G27650 80.180 7.85e-68 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal8g1480 LOB 1.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1480 - - gmx:100800167 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1480 8 19063366 19063881 Lal8g1480 8 19063366 19063881 ECH