Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1454 ATGGTGAATGAAGAACAAAAACGTTGCAGCCCAAGAAATCAAAGGAACCCATTAACAGGATCAAATGTTGAAAACAGTAACACCCTTTTCAGTCCAAGATTCAAAACTGCTGCTGCTCTTGCTGGTTGGGATGAAGAAGCATTGTTATTGGCTAGTCTTGTTGTTGAAGATACACCAGATCGTGATTCCAGGATCAAGAAGCGTTCAATTTTGAACTCTAAATCTCCTCACACCAGTTCAAGAAGGAAACGTAGAGCTCAGAGGAGTCCACATTCAATTCCTGTAGCTGTTCTTAATCTTGATGAAGAAGAAACTCCCAAAAAAGAAAGTGTGAAAAAGAAGAAAGAAAAGAAAACATGTGCTAATGAAGGAACTCAAGGAAGTAAAGTAGAAGGGAGTGAATTGAAGGAAAAGGTCTTTGATGTTTCTTCTTCCACTCCTACTCTTCCCTGCATTGATAAACTAAGGGATGAACTTTCTTGTGCAATTTGTTTGGAGATTTGCTTTGAGCCAAGTACTACTCCTTGTGGTCACAGCTTTTGTAGAAAATGTCTTCGATCTGCAGCAGACAAGTGTGGTAAAAAGTGCCCAAAATGCAGGCAACTAATAAGCAACGGACGATCTTGCACTGTCAACACTGTTCTGTGGAATACAATACAGCTCCTATTTCCACAGGAAGTTGAAGCAAGAAAAGCAGCCAGTGCTTCGAAAGTCAGACATACATCAGCTACGTCCAATATCCCCGAAGCGGCCTTTTATAATAACCTGAGGAATCAAAGCACAGAACGAGCATCCGGGGCATCAAGCAGAGGTATGAGTACAAGGAGAAATAACGTGATAATCGAGGATGAAGATGCTGCATTGGTTAGACGGTTTCATAGAGAAATTGATGGACAAAGCCAAGGAATTCGGGTGGTTCATGTTCATAATAATTCAAGGAATGGAACATCATCATCATCGGTAAGAACGCGGACAAGAAGAGGGATTACTAGTCAAGATGAGGATGTTGCTTTAGCTCAAAGGTTACAAAGAGAAGAGTTTATGCAGGCTTTCAGGGGAAAAAACCAAGAACAACAAACCAGTGCATCCTCATCCTCATCCTTATCTTTAGCATTAGCAAATGTGAGGGCCATGGCTCTTCGGGTGAGAGATAGAAGGATATGA 1164 0.4132 MVNEEQKRCSPRNQRNPLTGSNVENSNTLFSPRFKTAAALAGWDEEALLLASLVVEDTPDRDSRIKKRSILNSKSPHTSSRRKRRAQRSPHSIPVAVLNLDEEETPKKESVKKKKEKKTCANEGTQGSKVEGSELKEKVFDVSSSTPTLPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAASASKVRHTSATSNIPEAAFYNNLRNQSTERASGASSRGMSTRRNNVIIEDEDAALVRRFHREIDGQSQGIRVVHVHNNSRNGTSSSSVRTRTRRGITSQDEDVALAQRLQREEFMQAFRGKNQEQQTSASSSSSLSLALANVRAMALRVRDRRI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1454 387 MobiDBLite consensus disorder prediction 58 127 - -
Lal8g1454 387 MobiDBLite consensus disorder prediction 308 326 - -
Lal8g1454 387 Pfam Zinc finger, C3HC4 type (RING finger) 161 199 IPR018957 GO:0046872
Lal8g1454 387 PANTHER - 18 264 - -
Lal8g1454 387 PANTHER - 310 379 - -
Lal8g1454 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 230 IPR013083 -
Lal8g1454 387 ProSiteProfiles Forkhead-associated (FHA) domain profile. 268 323 IPR000253 GO:0005515
Lal8g1454 387 MobiDBLite consensus disorder prediction 12 29 - -
Lal8g1454 387 MobiDBLite consensus disorder prediction 308 332 - -
Lal8g1454 387 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Lal8g1454 387 SMART ring_2 161 199 IPR001841 -
Lal8g1454 387 ProSiteProfiles Zinc finger RING-type profile. 161 200 IPR001841 -
Lal8g1454 387 PANTHER UNCHARACTERIZED 310 379 - -
Lal8g1454 387 PANTHER UNCHARACTERIZED 18 264 - -
Lal8g1454 387 SUPERFAMILY RING/U-box 153 224 - -
Lal8g1454 387 MobiDBLite consensus disorder prediction 101 122 - -
Lal8g1454 387 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1454 Lal-Chr8 18733721 18737377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1454 70 274 C2H2 Transcription Factor Family AT5G39550 27.885 5.86e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1454 - - gmx:102666585 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1454 8 18733721 18737377 Lal8g1454 8 18733721 18737377 ECH