Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1406 ATGATGGCGATGGATATGGATCGAAATCTGCAATCAAGCTTTCCTTATTGGAAACCTCTTCGTCGCACTTTTGGATCCGATTCTCTTTTTTTCTCCTCTGGAAACCTCGAACGAGAACTCCTTGCCAAACAGGTTGCCTTGGATTTAACAGAAGAAAAGCAACATCTTGAGAATTGGATACAAGAAGAATGCAGGGAAGTATTTTGTCCTATTGTTGGTTGTGGATCACACTTGACTTCTATGGAGGACTTTGAAAATCACTATAATGCAAGGCATACTGCAAGTTGTTCAGTGTGTTCCAGAGTCTATCCAACATCACGTCTTCTCAGCATTCATGTATCTGAAGCTCATGATTCTTTTTTTCAGGCAAAAGCTGCACATGGCTATGACATGTATGAATGCTTAGTGGAAGGGTGTGGTTTGAAATTCAAAAGCTACAAAAGTAGGCATCAGCATCTAGTTGACAAACATAAATTCCCCACATCATTTGAATTTTACAAGAAGGCTCAACCATCAAAGAAACACAGGCTGAAGTCCCAAGGCAAAAAAGTTGTTCATAAAGAGGACGCATCAAGATTGATGGAGGTCGAAAATGCAGCCGTTGATGACCTTGCTTCGGCGGTCTCCAAATTAAGCACTTCTGATTCCACTCCTTCATCTATCAGCTTTGGTCACCGCCGCAAAGGCTTGACATTTGTCCCTCGAGCTGTTCGCCGTGGAAGTGGGTCAAACACTTGA 738 0.4241 MMAMDMDRNLQSSFPYWKPLRRTFGSDSLFFSSGNLERELLAKQVALDLTEEKQHLENWIQEECREVFCPIVGCGSHLTSMEDFENHYNARHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKAAHGYDMYECLVEGCGLKFKSYKSRHQHLVDKHKFPTSFEFYKKAQPSKKHRLKSQGKKVVHKEDASRLMEVENAAVDDLASAVSKLSTSDSTPSSISFGHRRKGLTFVPRAVRRGSGSNT 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1406 245 ProSitePatterns Zinc finger C2H2 type domain signature. 96 117 IPR013087 -
Lal8g1406 245 SMART c2h2final6 94 117 IPR013087 -
Lal8g1406 245 SMART c2h2final6 67 92 IPR013087 -
Lal8g1406 245 SMART c2h2final6 132 157 IPR013087 -
Lal8g1406 245 ProSitePatterns Zinc finger C2H2 type domain signature. 134 157 IPR013087 -
Lal8g1406 245 PANTHER UNCHARACTERIZED 7 239 IPR039258 -
Lal8g1406 245 PANTHER ZINC FINGER PROTEIN 511 7 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1406 Lal-Chr8 18157219 18160775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1406 3 239 C2H2 Transcription Factor Family AT5G14140 63.968 3.15e-110 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal8g1406 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1406 - - gmx:100819557 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1406 8 18157219 18160775 Lal8g1406 8 18157219 18160775 ECH
Lal8g1406 8 18157219 18160775 Lal10g0146 10 1694599 1695992 LSH