Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1105 ATGTCAATTTCTCTTGCAGCGATATTAGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATAGGTATTATACTTATATGGTACTGTCTGTCTCACAATAGGAGTGCTTCAAGGACTTCAGAAACAGGTTCCTCTGATCCTTCCCAAGTGGAAAGACAAGGTGTAATTGAGTTGCCAATTCGAGATACTAGGCGTTTTGACATGGAAGAGCTATCTCTGGCCACAAATAATTTCAGTGTCAAAAATATGATTGGAGAAGGAAAATTCGGGGAGGTTTACAAGGGTTTACTTCAAGACGGGAGGCTTGTAGCCATCAAAAAGCGTCGTGGGCTTGTTAGTCAGGAATTTGTTGATGAGGTACGCTATCTCTCATCTATACAACATCGGAATCTCGTTACTCTCATAGGTTACTGCCAAGAAAACAATCTACAGTTTCTTGTATATGAATATGTGCCTAACGGAAGTGTCTCCAGTCACTTGTATGGTGCCAGTCAACAACTGCAAGGGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTATTTGAGTCCCCGTCTGGTGCATAAGGATTTCAAAACAACTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTCGCAGATGCTGGACTTCGTAATTTTTTTGGGAGAGTTGATCTTGCAGCCTCGTCTTCTCTAGTGGAAGCAGATGAAATATTCCTTGCGCCCGAGGTGAAAGAATTCAGAGGATTTTCTGAAAAGAGTGACATATACAGCTTTGGGGTATTTTTGTTGGAATTATTAAGTGGGAAAGAGGCAACAGATTCTGCATCTTTGTACTCTAGCCAAAATCTGGTTGAATGGGTGCAAAGTAATCAAGACCGCGGCGTTATGTCTAACATCATTGATCAGAGATTGGGGAGTTTTACAGCCGAAGGCATGGAAGACTTCATCCTGCTGATAGTTAGATGTTTAGATCCTTCGACCGAGAGACGACCTGCAATGAGCTATGTGGTAACCGAACTTGATCGGATACACGATAAAGAAATGAACTTGACAACAATAATGGGCGAAGAAGGAACCCCAACTGTGACACTTGGAAGTCAGTTATTCAAAGCAACAACATAA 1140 0.4228 MSISLAAILGGAAGAVALVGIGIILIWYCLSHNRSASRTSETGSSDPSQVERQGVIELPIRDTRRFDMEELSLATNNFSVKNMIGEGKFGEVYKGLLQDGRLVAIKKRRGLVSQEFVDEVRYLSSIQHRNLVTLIGYCQENNLQFLVYEYVPNGSVSSHLYGASQQLQGKLEFKHRLSIAQGAAKGLAHLHYLSPRLVHKDFKTTNVLVDENFIAKVADAGLRNFFGRVDLAASSSLVEADEIFLAPEVKEFRGFSEKSDIYSFGVFLLELLSGKEATDSASLYSSQNLVEWVQSNQDRGVMSNIIDQRLGSFTAEGMEDFILLIVRCLDPSTERRPAMSYVVTELDRIHDKEMNLTTIMGEEGTPTVTLGSQLFKATT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1105 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Lal8g1105 379 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 378 - -
Lal8g1105 379 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Lal8g1105 379 Pfam Protein tyrosine and serine/threonine kinase 80 346 IPR001245 GO:0004672|GO:0006468
Lal8g1105 379 SUPERFAMILY Protein kinase-like (PK-like) 58 346 IPR011009 -
Lal8g1105 379 Gene3D Transferase(Phosphotransferase) domain 1 151 364 - -
Lal8g1105 379 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 378 - -
Lal8g1105 379 ProSiteProfiles Protein kinase domain profile. 78 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal8g1105 379 Gene3D Phosphorylase Kinase; domain 1 39 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1105 Lal-Chr8 9207814 9211899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1105 66 351 Trihelix Transcription Factor Family AT5G38560 38.851 4.65e-60 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Lal8g1105 PK_Tyr_Ser-Thr 9.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1105 - - gmx:100820178 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1105 8 9207814 9211899 Lal10g0234 10 3358989 3363186 LSH