Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1052 ATGGAAGAGCCTATTATGGTTAACAAAGGAGAGGAGCCTCTTGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGATGAGGAGATCATAACTTTTTATTTGACTGAAAAAGTTATGAATAATAATTTTAGTGCAACTGCTATTGGTGAAGCTGATTTGAACAAGTCTGAGCCTTGGGATTTACCAAAGAAGGCAAAGATGGGTGAGAAACATTGGTACTTCTTCTTCCAAAAAGATAAAAAGTATCCAACAGGGATGAGAACAAATCGAGCAACTGAATCTGGTTATTGGAAAGCCACAGGAAAAGACAAAGAGATTTATAAAGGGAAAGGAAATCTTGTTGGGATGAAGAAAACCCTTGTGTTCTATAGAGGGAGAGCTCCTAAGGGAGAGAAAACCAATTGGGTCATGCATGAGTTTAGATTGGAAGGAAAATTTGCATGTTTCAACCTCCCAAAGGCCGCAAAGGATGAATGGGTTGTTAGCAAGGTTTTTAACAAAACCACAGATGTTAAAAAGACTCCATCAATTCATGGCCTTTTGAGAATGAATTCTATTGGAGATGATATTCTTGATTGTTCTTCAATTCCACCTCTTGTGAATCTTCCCTACAGCAACAACAATACATTGGACAATGACTTCAAGTGCATCACCAACACACAATTATCATCAGCTAAATCTTCATCTGATGGTTATTATCTTCCCAGCTTCTCCATCAACAATCATCAGCAGCACTTTATCAAGCCTGAAAATCACAGATCCTATGAGAACAATCCAATCAACAACAACAACAACAACAACAACAACCTTTATAATCAAGTTAGTTTCAGCAAAACCCCACTTTTGCAATCTCAATTTAGAATCCAAAACCAAAGCCCCTCTTTTCAGCAAAACATGTTCTCAGATAATTACTATGTTCAACAAAACAAGATGAATAGTTCCATGCCAATTTCTGGTTTTGTAAGCAATAATACTAGTAACTATGATGATGATGCTTTCCTAAGAACATTTGCAGCTAAGAATGAATACATATCTGGATTGGACAAACAACAGTGCAAGATGGAACAATCTGTGGTGAGTGTGTCCCAAGACACTGGCATTAGCAACGACAGAAACACAGACACATCCTCAGCTATATCGAAACAAGACATGGGATCAGGAATGAATAGGTCATTGTACGAGGATCTTGAAGATCCATCATCAAATGTTGCTGCACCTCTCTCAGATTTGCATTGCTTATGGGATGATTACTAA 1254 0.3812 MEEPIMVNKGEEPLDLPPGFRFHPTDEEIITFYLTEKVMNNNFSATAIGEADLNKSEPWDLPKKAKMGEKHWYFFFQKDKKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFACFNLPKAAKDEWVVSKVFNKTTDVKKTPSIHGLLRMNSIGDDILDCSSIPPLVNLPYSNNNTLDNDFKCITNTQLSSAKSSSDGYYLPSFSINNHQQHFIKPENHRSYENNPINNNNNNNNNLYNQVSFSKTPLLQSQFRIQNQSPSFQQNMFSDNYYVQQNKMNSSMPISGFVSNNTSNYDDDAFLRTFAAKNEYISGLDKQQCKMEQSVVSVSQDTGISNDRNTDTSSAISKQDMGSGMNRSLYEDLEDPSSNVAAPLSDLHCLWDDY 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1052 417 MobiDBLite consensus disorder prediction 361 394 - -
Lal8g1052 417 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 369 - -
Lal8g1052 417 MobiDBLite consensus disorder prediction 361 387 - -
Lal8g1052 417 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Lal8g1052 417 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Lal8g1052 417 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Lal8g1052 417 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Lal8g1052 417 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1052 Lal-Chr8 8473877 8476114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1052 1 335 NAC Transcription Factor Family AT5G18270 52.035 4.29e-103 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal8g1052 NAM 2.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1052 - - aprc:113861501 553.132