Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1050 ATGAATCAATTTGGATTTCAAGGAATGGAGTTTTCAGAGTCAAATCCTTCAGTAGTTGTGGATTCATCAATCACCCTTTTAATTAAGCATCTTCCTGAAGCCATTCCTCATGATACCCTTTCTAGACTCTTGTCCCATTATGGTGCTACCTCTGTTCGTTCTTGCTCTAATGGGAGGTTGAGGAATTGTGCTTTTGTGGATTTCAAAAATGATACTCTGGCATCTCAAGCTCATCGTCAACTAAATGGGTTGAGATTTCTTGGTAAAGTCCTGTCAGCAGAGAGAGCTAGTCACCCAAATGAGATTCGTGAAAAAAGCACGGGAGATCAGCTTGGAAAAGACTCAAAAACACCGTTGGTGAAGAATGCAAATGTAGCCAAACCTAACGATGGAGATATAAGATCAGGAGGTCTCCCTATTCCCGAGCCAGTTGCTGAAAGACTTGGTGTTGACTATCCATTTCCTCCGCACCTTGAGTATGCTTACCCTCCACCAGATGGAAATATACTTACAAACATTGTAAATGCTTTGATCGCTGTTCCCCGCTTTTACACTCAGGTTCTTCACTTGATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCACTGCCTACACCACCTTTACCACCGGAGGTACCACTTCTGGCACCACCTCTGCCTCCTCCATCTGTAACTGTGAAGCCTCAGCTTGCTGATCTGTCCAGTGGTGAATCAGAGATGGAATCTTCAGATGAGGAGGATGGAACAAGAACAGAAAAGTCTGGGCAAAAGCGTCCCAGGCATGAGTCCATTGTTGGCCCTGCCATTGATAAAGATGTAGCTCATGAGGCTGTTGGAGTAAAACCAGCCACTTTGGTCCCAAAAGAAATCCCGGTTATAAAGAAAAGGAACCCTGTCTTGCAGATAAACATCAAAGCTACCCCGAATGAACATAAAGATGATGAGCCAAAACTAGAGTTACAAGACCCTGTCAAAGATGTTCCAGATCCTAACAAATTTTTGACTCTCGAAGAATTAGAGAACGGAAAGTTGCCTCCTGAGGAAATATTATCTCTTCCAATGTTTAAGAACTATACCGCCGGAAATCCTGCTCCTGTATTGTATATTAAGAATCTTGCAAAGGACGTGATTGCTGATGATTTCTATTTTATATTTGGGTCCTTGTTTGGAAGTATTGAGGCTGCAAAGTCTGGCCTCCAAATCAAACTGATGCAGGAAGGAAGAATGAGAGGTCAAGCATTTCTAACATTCCCCTCAATTGAACTGGCTCATCATGGTCTGAATCTAGTGAATGGATATTTATTAAAAGGCAAGCCAATGGTCATCCAATTTGGTAGGAATCCTGCTGCTGCCAAAGGAACTTAA 1368 0.4262 MNQFGFQGMEFSESNPSVVVDSSITLLIKHLPEAIPHDTLSRLLSHYGATSVRSCSNGRLRNCAFVDFKNDTLASQAHRQLNGLRFLGKVLSAERASHPNEIREKSTGDQLGKDSKTPLVKNANVAKPNDGDIRSGGLPIPEPVAERLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPLLAPPLPPPSVTVKPQLADLSSGESEMESSDEEDGTRTEKSGQKRPRHESIVGPAIDKDVAHEAVGVKPATLVPKEIPVIKKRNPVLQINIKATPNEHKDDEPKLELQDPVKDVPDPNKFLTLEELENGKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVIADDFYFIFGSLFGSIEAAKSGLQIKLMQEGRMRGQAFLTFPSIELAHHGLNLVNGYLLKGKPMVIQFGRNPAAAKGT 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1050 455 SUPERFAMILY RNA-binding domain, RBD 23 448 IPR035979 GO:0003676
Lal8g1050 455 MobiDBLite consensus disorder prediction 97 111 - -
Lal8g1050 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 448 IPR000504 GO:0003723
Lal8g1050 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 91 IPR000504 GO:0003723
Lal8g1050 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368 441 IPR000504 GO:0003723
Lal8g1050 455 CDD RRM1_RBM40_like 25 96 IPR034147 GO:0005515
Lal8g1050 455 PANTHER UNCHARACTERIZED 17 453 IPR045164 -
Lal8g1050 455 CDD RRM2_RBM40_like 367 446 - -
Lal8g1050 455 Gene3D - 361 454 IPR012677 -
Lal8g1050 455 MobiDBLite consensus disorder prediction 247 268 - -
Lal8g1050 455 Gene3D - 20 118 IPR012677 -
Lal8g1050 455 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 17 453 - -
Lal8g1050 455 MobiDBLite consensus disorder prediction 97 140 - -
Lal8g1050 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 98 IPR000504 GO:0003723
Lal8g1050 455 MobiDBLite consensus disorder prediction 220 268 - -
Lal8g1050 455 SMART rrm1_1 367 444 IPR000504 GO:0003723
Lal8g1050 455 SMART rrm1_1 25 94 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1050 368 444 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 2.55e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1050 K13157 - gmx:100818499 680.633