Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1046 ATGCAATTAGCATCAAATGGTGGCAACAAGGATGATCATAATGAAATCCAACCCATCTTGAATCACCATTTCCATTCTCCTGCCGACACAGAAGGAGGAGACTCTTGTTCATTTTCATGTGAAATTATTCCTCCTCCTCTTCTCAACCCTGACAGCGATGATGATGATGATGATTTACATAATGTTCATGTAGATGTTGTTGATGAGACTTGTCATCTTGTAAATTCTTCTGATCACCACCCACAATGCCGTATATGCCTTGATATTGGAGGACAAGATTTAATTGCACCATGCCATTGCAAAGGTACTCAAAAGTATGTTCACAGATCATGTCTCGATAATTGGAGGTCTACAAAGGAGGGATTTGCCTTTTCTCACTGTACAGAGTGCAGAGCTGTTTTCATATTACGTGCTAATGTCCCACCTGATCGCTGGTGGTTGAGATTGAAGTTTCAGTTCCTTGTTGCGAGGGATCATGCTTTCATTTTTATAATTGTTCAACTGGTGGTTGCTTTCTTGGGGGTGCTTGTTTACAAATTTTATGGAGATGAACTGAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTACACGATGGCTGTTCTAGCCATTGTTTTGGTGGGTTTGCTTTATGGCTTCTTCATAGCCATAATATGTGGCCAAAGGATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAGTTGACAAAGGAATATGTGGTAGAAGATCGTGAACATGTAAGAATGTGCCTGAACTTGATCCCAGCCATAGCAGCCTTGAATCTATTGCATAAGCAGCTTGGTCCCTCTGCATTTGTTTATCACATTCGACTGTAA 846 0.4054 MQLASNGGNKDDHNEIQPILNHHFHSPADTEGGDSCSFSCEIIPPPLLNPDSDDDDDDLHNVHVDVVDETCHLVNSSDHHPQCRICLDIGGQDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVRMCLNLIPAIAALNLLHKQLGPSAFVYHIRL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1046 281 CDD RING_CH-C4HC3_MARCH 83 131 - -
Lal8g1046 281 SUPERFAMILY RING/U-box 78 134 - -
Lal8g1046 281 SMART ringv_2 82 131 IPR011016 GO:0008270
Lal8g1046 281 PANTHER OS02G0132300 PROTEIN 2 259 - -
Lal8g1046 281 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 259 - -
Lal8g1046 281 ProSiteProfiles Zinc finger RING-CH-type profile. 75 137 IPR011016 GO:0008270
Lal8g1046 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 135 IPR013083 -
Lal8g1046 281 Pfam RING-variant domain 83 130 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1046 Lal-Chr8 8355098 8358352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1046 68 229 C3H Transcription Factor Family AT1G50440 73.457 7.64e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1046 - - lang:109358456 498.819