Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1038 ATGGATGTGTGCCAAAATGTATCAGTTTCAAGTGAATGCAAGCAAGAGCAGATCTATAACCCTTGCTCAACAAGCCTTGATGACCTATTCTCTTCTCAGAACATGGAAGTGGATGTTGGGTTGGAGTGGCTGTCAGTATTTGTTGAAGACTGTTTCTCAAGCCCCCCAAGCTGTTTATTGGGACCTTCTGGTGTTCTAACAACAAGTACAAGCTCAAAGCCTTCAAGCACATTGAAGAGACACCAGAATCAGAATGAGTCATTTTCACTTCAGAATCTTGCAGTGCATGGAAAAGCCAGAAGCAAAAGGAAAAGACTTTCAGCTCCTAGAACCAAAAACCCTTTAAGAAGTAGCATATGGTCACATAAAATAACAACAACACAAAATGAAACAACTTTTTGTTCAGACCCTCCACTTCTCAAACAGGCTTATTGGTTGGCTGATAGTGAACTCTTTGTCCCTAAACAGAAGAAACATGATGAACAACAAGAGGTAGTAGTGGAAACAAAAGATGGACAAGTTATTATGATGGAGAAAGGGATTGTGTTGGATAAGGAAAACTTTGAGGACACTGACCCTAATGGTGATGATGTTGTTTTTAGCAATAATTTTCAGCAGCATCCAATGCCAAGAAGGTGCACTCATTGTCTTTCTCAGAGGACCCCACAATGGAGGGCAGGACCATTAGGTCCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGTAGGTTACTTCCAGAGTATAGGCCAGCAAAAAGTCCTACTTTTGTAAGCTACTTGCACTCAAATTCCCATAAGAAAGTTATGGAGATGAGGGACAAAGATTTCTTATCCTGA 846 0.4102 MDVCQNVSVSSECKQEQIYNPCSTSLDDLFSSQNMEVDVGLEWLSVFVEDCFSSPPSCLLGPSGVLTTSTSSKPSSTLKRHQNQNESFSLQNLAVHGKARSKRKRLSAPRTKNPLRSSIWSHKITTTQNETTFCSDPPLLKQAYWLADSELFVPKQKKHDEQQEVVVETKDGQVIMMEKGIVLDKENFEDTDPNGDDVVFSNNFQQHPMPRRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRDKDFLS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1038 281 CDD ZnF_GATA 212 259 IPR000679 GO:0006355|GO:0043565
Lal8g1038 281 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 208 271 - -
Lal8g1038 281 SMART GATA_3 207 261 IPR000679 GO:0006355|GO:0043565
Lal8g1038 281 Pfam GATA zinc finger 213 247 IPR000679 GO:0006355|GO:0043565
Lal8g1038 281 MobiDBLite consensus disorder prediction 89 112 - -
Lal8g1038 281 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 276 - -
Lal8g1038 281 ProSitePatterns GATA-type zinc finger domain. 213 238 IPR000679 GO:0006355|GO:0043565
Lal8g1038 281 ProSiteProfiles GATA-type zinc finger domain profile. 207 243 IPR000679 GO:0006355|GO:0043565
Lal8g1038 281 Gene3D - 203 277 IPR013088 GO:0006355|GO:0008270
Lal8g1038 281 PANTHER GATA TRANSCRIPTION FACTOR 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1038 Lal-Chr8 8259252 8260806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1038 41 275 C2C2-Gata Transcription Factor Family AT4G32890 38.272 3.61e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal8g1038 GATA 1.9e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1038 - - gmx:100812088 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1038 8 8259252 8260806 Lal10g0401 10 9862640 9864446 LSH