Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1024 ATGGAAATTCAATTCCAGCAACCAAAGCTGCAGCATCAGAAAGGTGGCATTTCAGTGACTAATAACAACAAAGTAGGCAAATTCAAAGGAAGAAGCAGAAACAACAATAACAACAACAACAACACAAACAAATTTGTTGGAGTGAGACAAAGACCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACACAGAAGATAAGAATGTGGCTTGGCACTTTTGAGACAGCTGAAGAAGCAGCAAGAGCTTATGATGAAGCTGCATGCCTTCTTCGCGGATCGAACACTCGAACAAACTTCATCACTCATGTTTCAATGGATTCTCCTATTGCTTTTCGGATTCGGAATCTTCTTAAAGAAAGAAAAGGTGTCAAAGATGAACAAGAAGATATTGTTAGTGTTGGCACCAGCATTAGCAGTGCTAGCCCTAATACTAATGCATGCAATAATAACAATGACAAGAATGCTAGCACTCTTTCTAGTGTGACAATTCAAAACAGCACAAAGCTGTTTGTTGATGATTTTAAATCTGATTTTAGCAATTGTAGGGTGGAATCTGAATCCAATTTCTCATGGGATTTTGGGCAAGTCTTTGATTGTTTTCCTTTTGCTCAAATGTTGGATATACCAAAGATTGATGGCATGATTGATACACAACATTTGGAGCTATCAGAATTTGAAAGAATGAGAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCATGAGTACATGGAAGCTATTAAGGACTCCAATGAATCTCTCTGGGATCTTCCACCTATATGCTCATTGTTCTGTTAA 813 0.3813 MEIQFQQPKLQHQKGGISVTNNNKVGKFKGRSRNNNNNNNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSMDSPIAFRIRNLLKERKGVKDEQEDIVSVGTSISSASPNTNACNNNNDKNASTLSSVTIQNSTKLFVDDFKSDFSNCRVESESNFSWDFGQVFDCFPFAQMLDIPKIDGMIDTQHLELSEFERMRVERQISASLYAINGVHEYMEAIKDSNESLWDLPPICSLFC 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1024 270 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 257 - -
Lal8g1024 270 MobiDBLite consensus disorder prediction 1 47 - -
Lal8g1024 270 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Lal8g1024 270 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Lal8g1024 270 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Lal8g1024 270 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Lal8g1024 270 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Lal8g1024 270 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Lal8g1024 270 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Lal8g1024 270 CDD AP2 44 100 IPR001471 GO:0003700|GO:0006355
Lal8g1024 270 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 21 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1024 Lal-Chr8 8061889 8062701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1024 31 270 AP2-EREBP Transcription Factor Family AT5G19790 42.578 1.18e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal8g1024 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1024 K09286 - gmx:100796898 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1024 8 8061889 8062701 Lal10g0453 10 10734434 10735249 LSH
Lal8g1024 8 8061889 8062701 Lal13g1599 13 15818365 15819705 PCT
Lal13g1599 13 15818365 15819705 Lal8g1024 8 8061889 8062701 PCT