Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0994 ATGTACCACAACACTTCCGGTTCCGGTCGCCGGAACAATAACAACGCCATCGCCGGTTGCGGCACGAGTTCCCGGTCGGTGACGGAAACCGTTAACGGTTCTCACAATTTCGTGATAAAGGGTTACTCTCTGGCGAAGGGAATCGGCGTTGGGAAACACATAGCGAGTGAGACGTTTAGCGTTGGAGGGTATCAGTGGGCTATATACTTTTACCCTGATGGGAAGAATCCTGAGGATAATTCCGCTTATGTTTCGGTGTTCATCGCTCTCGCGAGTGATGGCACCGATGTTCGTGCTTTGTTTGAGCTTACTCTTATTGATCAGTCACCTAATGCCAAGCATAAGGTTCATAGCCACTTTGACCGCTCCCTCGAGAGCGGTCCTTATACTCTTAAGTATCGCGGCAGCATGTGGGGCTATAAGCGCTTTTTCAAACGAGCTCAACTTGAAGCTTCATCCTTCCTTAAGGATGACTGCTTGAAGATTAATTGCACTGTTGGTGTTGTGGTGTCATCCATAGATTGTTCAAAATTAAACACAATACATGTTCCCGAATCTGATATTGGAGCACATTTTGGTATGCTGTTAGAGAATGAGGAAGGATCTGATGTCACTTTCTCTGTCAATGGAGAACGGTTTCATGCACATAAGCTTGTGTTGGCTGCTCGATCAACTGCATTTGAAACTGAGTTTTTCAATGGGATGGAGGAAGATGATCATGATGTAGTTGTTACTGACATGGAACCTAAGGCTTTGCTTCATTTTATTTATAGAGATGCTCTTATAGAAGATGAAGAGCTCTATATGTCACGTTCATCATTTTTAGATTCAGTATCTGAAACATTTGCAGCTAAATTGTTAGCTGCTGCAGAAAAATATGGCTTGCCAAGGCTTAAGCTGATGTGCGAGTCTGTACTTTGCAAAGACATATCTATAGATTCTGTTGCCTATATTCTGGCCCTTGCTGATCGTTATCATGCTACACAACTAAAGTCCATTTGTCTACAATTTTCTGCTGAAAACCTTGTTGCGGTGATGCATTCTGATGGCTTTGAGTATCTTAAGGAAAACTGTCCATTGCTACAATCGGAACTGCTAAAGACAGTGGCAGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAATGTCGAAGTGTGTGGGCCCAATTTTCTGATGGTGGTGATACCAATGAAAGGAGTGTAAGACAACAAACCTGGGAAAATGGAGTTGAAAGAAGTCCAAGCTTATGGGTTCAGCTCTCTGATGGTGTTAACAACAACGACGATAGGAGTCCTGGGCAAGAAGCTTGA 1308 0.4373 MYHNTSGSGRRNNNNAIAGCGTSSRSVTETVNGSHNFVIKGYSLAKGIGVGKHIASETFSVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASDGTDVRALFELTLIDQSPNAKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLNTIHVPESDIGAHFGMLLENEEGSDVTFSVNGERFHAHKLVLAARSTAFETEFFNGMEEDDHDVVVTDMEPKALLHFIYRDALIEDEELYMSRSSFLDSVSETFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYHATQLKSICLQFSAENLVAVMHSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNERSVRQQTWENGVERSPSLWVQLSDGVNNNDDRSPGQEA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0994 435 CDD BTB_POZ_BPM_plant 188 307 - -
Lal8g0994 435 Gene3D Potassium Channel Kv1.1; Chain A 178 304 IPR011333 -
Lal8g0994 435 CDD BACK_AtBPM-like 307 368 IPR034090 -
Lal8g0994 435 CDD MATH 33 166 IPR002083 GO:0005515
Lal8g0994 435 ProSiteProfiles BTB domain profile. 202 256 IPR000210 GO:0005515
Lal8g0994 435 SUPERFAMILY POZ domain 181 308 IPR011333 -
Lal8g0994 435 Gene3D - 309 383 - -
Lal8g0994 435 ProSiteProfiles MATH/TRAF domain profile. 32 166 IPR002083 GO:0005515
Lal8g0994 435 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 16 383 IPR045005 GO:0016567
Lal8g0994 435 MobiDBLite consensus disorder prediction 1 23 - -
Lal8g0994 435 SUPERFAMILY TRAF domain-like 29 168 - -
Lal8g0994 435 SMART math_3 37 149 IPR002083 GO:0005515
Lal8g0994 435 SMART BTB_4 202 310 IPR000210 GO:0005515
Lal8g0994 435 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 16 383 - -
Lal8g0994 435 MobiDBLite consensus disorder prediction 392 435 - -
Lal8g0994 435 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 31 170 IPR008974 GO:0005515
Lal8g0994 435 Pfam BTB/POZ domain 194 308 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0994 Lal-Chr8 7724622 7730253 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal8g0994 BTB 1.5e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0994 K10523 - gmx:100809683 787.334