Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0978 ATGAAATCACAACATTTAAACCATGGTGATAGTAGTTTCAATGAAGATAAAAAGATTTTCCCTTCACCTCTTTCTTTGAGTCCTATAATGTTGCAGCAACAGGAGAGTAAGGGAACAAAGAGAACAAATGATGAAGGAAATGGGTACTTTGGGGTTGAGATCAATAACTTGTCTTTGAAACTTGGTCAGGAAATAGAAGAAGCTAAGAGATCTGTTGCAAGAAAAAATGGGCATGTTAAGTTGTGTGTTAGAGGTCATTGGAGGCCAAATGAAGATGCAAAGCTTAAGGAGCTTGTTGCCCAATATGGTCCTCAAAACTGGAACTTGATTGCAGAACATCTTCAAGGAAGATCAGGAAAAAGTTGTAGATTGAGATGGTTTAATCAGATAGACCCAAGAATTAATAGAAGGGCTTTTTCTGATGAAGAAGGGGAAAGACTCTTAGCTGCTCATAAAATATATGGTAACAAATGGGCTATTATTGCTAGAATTTTTCCTGGTAGAACAGACAATGCAGTGAAGAATCATTGGCATGTGATTATGGCTAGGAGGCAAAAATATAACTCAAGTTGGTATAGAAGAAGAAAGCCAAATTCTGATAAAAAAAGCCTTGTAAAGGGATTAAAATTGATTCTACCAGAAAACAATGCAGCTAGTGAATCAACCATGTCAAGCACCATAGATATATCTGCCTCAACTTGCACCAACCTTTCCCTCACTCCCTCTTCAACCAAACTAAGTCCTAGCATTTTCAGTAAACTGAACCCAGTTCAACATCACACAGGCCATGCATCACTAATAGGTCTATGTAGAGAAAGGGTGGTCTCAACAGAAGATGTTGGTTTTGACAAGTTTTTTGATGATTGGAATGGAACATGTGAGCCTAGAGGAGTATCACTATCTGAGTCAGTGGCCACCAATATGTTCAATCTTTCAATTTCTAGGGAAAGTGGAAAAGTGGGTCATAAGATTAGCATGCCATTCATTGATTTTCTTGGAGTAGGAGCTAAATAA 1014 0.3787 MKSQHLNHGDSSFNEDKKIFPSPLSLSPIMLQQQESKGTKRTNDEGNGYFGVEINNLSLKLGQEIEEAKRSVARKNGHVKLCVRGHWRPNEDAKLKELVAQYGPQNWNLIAEHLQGRSGKSCRLRWFNQIDPRINRRAFSDEEGERLLAAHKIYGNKWAIIARIFPGRTDNAVKNHWHVIMARRQKYNSSWYRRRKPNSDKKSLVKGLKLILPENNAASESTMSSTIDISASTCTNLSLTPSSTKLSPSIFSKLNPVQHHTGHASLIGLCRERVVSTEDVGFDKFFDDWNGTCEPRGVSLSESVATNMFNLSISRESGKVGHKISMPFIDFLGVGAK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0978 337 Gene3D - 137 206 - -
Lal8g0978 337 PANTHER OS08G0435700 PROTEIN 34 336 - -
Lal8g0978 337 MobiDBLite consensus disorder prediction 1 15 - -
Lal8g0978 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 130 IPR017930 -
Lal8g0978 337 CDD SANT 138 178 IPR001005 -
Lal8g0978 337 ProSiteProfiles Myb-like domain profile. 131 181 IPR001005 -
Lal8g0978 337 PANTHER MYB PROTEIN-RELATED 34 336 - -
Lal8g0978 337 MobiDBLite consensus disorder prediction 1 21 - -
Lal8g0978 337 CDD SANT 87 128 IPR001005 -
Lal8g0978 337 SMART sant 135 183 IPR001005 -
Lal8g0978 337 SMART sant 83 132 IPR001005 -
Lal8g0978 337 Gene3D - 83 135 - -
Lal8g0978 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 185 IPR017930 -
Lal8g0978 337 Pfam Myb-like DNA-binding domain 84 128 IPR001005 -
Lal8g0978 337 Pfam Myb-like DNA-binding domain 136 179 IPR001005 -
Lal8g0978 337 ProSiteProfiles Myb-like domain profile. 84 130 IPR001005 -
Lal8g0978 337 SUPERFAMILY Homeodomain-like 83 177 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0978 Lal-Chr8 7504307 7507254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0978 64 336 MYB Transcription Factor Family AT5G17800 45.455 4.48e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal8g0978 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0978 K09422 - jre:109000849 356.295