Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0924 ATGGCAGTTATTATGTGTAGGATATTCTTTACACTCTTATTGTTATCTTCAGTTTTCTCAATAGCCTCATCAAGAAGAGCACCTTATTCCAATAGCAACATAGATTGGTGGTGCAACCTAACCCCAGACCCAGAGCCATGCAAATATTACTTAAGTCAAATAAATCACCATGGCGAAATCAAGCACAGGTCCGAATTCCGGATAATGCTTGTTCAATTGGCCTTAAAGCAAGCGGTTATCATGCAAAGGGAAGCGCGGGAATTCGAACAAAACATGGTGACCGAGAAGCATAGAGCTTTACATAATGATTGTGAGAAGCTCTATGAGAACACCATCTTCCATCTCAATCGTACACTTGAAGGATTGCATGGGAAGAGAAGTTGTACACCGGTTGATGTACAGACTTGGCTCAGCACTGCTCTTACAAACATCCAAACTTGTGGAACTGGGGTAGTTGAACTCAATGTTGAAGATTTCATGGTGTCAAAAATGAGCAGCAATATTACTAAGATGATAAGGAACAGCTTAGCCATCAATATGGATTTCCTGAAACAAAATGCTGAAAAGCACAAAGTAGAAACAAAAGAAGCCTTTCCAAGTTGGTTTTCCAGGCATCATAGGAAGTTGTTACAGTCTAATTCGACGAAAAAGGCACATCTTGTGGTTGCAAGAGATGGTTCAGGGCATTTCAAGAATGTCCAAGATGCCCTAAATGCAGCAGCAAGGAGAAAAGTAAAGACAAGGTTTATTATACATGTGAAGAAAGGAGTTTATGCAGAGAATATTGAGGTAGAGAAGAACAATGATAACATCATGCTGGTTGGTGATGGGATGGCAAATACCATAATAACGAGTAGTAGGAGTGTTCAAGATGGCTTCACCACCTATAGCTCAGCAACAGCAGGCATAGATGGCCTCCACTTCATAGCACGTGACATAACTTTCCAAAACACAGCCGGTCCTCTCAAAGGTCAAGCTGTGGCGCTCCGATCAGCCTCTGACCTCTCCGTCTTCTACCGATGCGCTATAGCTGGTTATCAAGACACTCTCATGGTTCATGCTCAGCGTCAATTTTACAGGCAATGCTACATCTATGGCACCGTAGATTTCATCTTTGGTAATGCTGCAGTGGTGTTCCAAAATTGTAACATTTTTGCTAGAAAGCCTTTAGATGGCCAAGCAAACATGATTACCGCCCAAGGTCGAGGGGACCCATTCCAAAACTCTGGAATTTCAATCCACAATTGCCAAATAAGAGCTGCACCAGACCTCAAGCCTGTTGTTGACAAATACAACACCTTCTTGGGCAGACCATGGCAGCAATACTCAAGAGTTGTGGTCATGAAAACTTTCATGGACACCTTGGTCAACCCATTGGGTTGGTCTCCTTGGGGTGATACTGATTTTGCTCAGGATACATTATATTTTGGAGAGTATGAAAACTCTGGGCCAGGTTCGTCTACAAGCAACAGAGTAAAATGGCCTGGTTTTCATGTGATAACAAGCCCTGCTGAGGCATCTAAGTTCACAGTCAATGCCCTTCTTGCAGGTGGCACATGGTTACCAACCACAAGTGTGCCTTTTAGCTCTGGCATTTGA 1599 0.4296 MAVIMCRIFFTLLLLSSVFSIASSRRAPYSNSNIDWWCNLTPDPEPCKYYLSQINHHGEIKHRSEFRIMLVQLALKQAVIMQREAREFEQNMVTEKHRALHNDCEKLYENTIFHLNRTLEGLHGKRSCTPVDVQTWLSTALTNIQTCGTGVVELNVEDFMVSKMSSNITKMIRNSLAINMDFLKQNAEKHKVETKEAFPSWFSRHHRKLLQSNSTKKAHLVVARDGSGHFKNVQDALNAAARRKVKTRFIIHVKKGVYAENIEVEKNNDNIMLVGDGMANTIITSSRSVQDGFTTYSSATAGIDGLHFIARDITFQNTAGPLKGQAVALRSASDLSVFYRCAIAGYQDTLMVHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQGRGDPFQNSGISIHNCQIRAAPDLKPVVDKYNTFLGRPWQQYSRVVVMKTFMDTLVNPLGWSPWGDTDFAQDTLYFGEYENSGPGSSTSNRVKWPGFHVITSPAEASKFTVNALLAGGTWLPTTSVPFSSGI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0924 532 Pfam Pectinesterase 220 517 IPR000070 GO:0030599|GO:0042545
Lal8g0924 532 SUPERFAMILY Pectin lyase-like 215 531 IPR011050 -
Lal8g0924 532 CDD PMEI-like_3 36 179 - -
Lal8g0924 532 SMART PMEI_2 29 178 IPR006501 GO:0004857
Lal8g0924 532 ProSitePatterns Pectinesterase signature 2. 364 373 IPR033131 -
Lal8g0924 532 Coils Coil 71 91 - -
Lal8g0924 532 Gene3D - 213 532 IPR012334 -
Lal8g0924 532 PANTHER PECTINESTERASE 6 531 - -
Lal8g0924 532 PANTHER PECTINESTERASE 6 531 - -
Lal8g0924 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 182 IPR035513 -
Lal8g0924 532 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 179 IPR006501 GO:0004857
Lal8g0924 532 Pfam Plant invertase/pectin methylesterase inhibitor 33 178 IPR006501 GO:0004857
Lal8g0924 532 Coils Coil 173 193 - -
Lal8g0924 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 179 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0924 Lal-Chr8 6889711 6891309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0924 33 532 Carbohydrate Esterase AT3G47400 57.422 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0924 K01051 - gmx:100806133 813.527