Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0897 ATGCAACAACAACAGCAACAACAACAAATTGGGATGGAGAATTCTGAGTTGTTCAAATTACTAGCTGCCACTAATAGTTCCTTCTTTCACTCAACAACAACCACAATGCACCAAAAAAACTTGTGTAGTAGTTCTTCTAATAATTATAATAATTACCCATTGGAGTTATCAGAAATTACTGATGCACTCTCTCAACAGCAGGATAGAGCTCTTGCTGCTTTGAAGAACCATAAAGAGGCTGAAAAGAGAAGAAGGGAAAGAATCAATTCTCACCTCAATCAGCTTAGAACTCTTCTCCATTGTAATTCTAAGACAGATAAGGCTTCACTTCTAGCAAAGGTAGTGAAGCGAGTGAAGGAACTGAAAAAGCAAACATCTGACTTCACTGAACTCGAAACCCTTCCATCAGAAACTGACGAGATCACCATACTCTCCATCAGTGATGAAGACTACAGTGATCTCGCCGGCGATGGAAGGCTCATATTCAAGGCCTCTTTATGTTGTGAGGATCGCTCAGACCTGATCCCCGACATCATCGAAATCCTCAACTCTCTTCATCTGAAAACCCTGAAAGCAGAAATGGTCTCACTTGGTGGAAGAACACGAAACATTCTTGTTGTTGCTGCTGATAAATACCATAGCATTGAATCAATCCCATTCCTTCAGAACTCATTCAAGTCTCTGTTGGAACGTTCAAACTCTAGTGACAGATCAAAACGGCGCCGTAGGTTAAACTGA 738 0.4092 MQQQQQQQQIGMENSELFKLLAATNSSFFHSTTTTMHQKNLCSSSSNNYNNYPLELSEITDALSQQQDRALAALKNHKEAEKRRRERINSHLNQLRTLLHCNSKTDKASLLAKVVKRVKELKKQTSDFTELETLPSETDEITILSISDEDYSDLAGDGRLIFKASLCCEDRSDLIPDIIEILNSLHLKTLKAEMVSLGGRTRNILVVAADKYHSIESIPFLQNSFKSLLERSNSSDRSKRRRRLN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0897 245 Coils Coil 63 83 - -
Lal8g0897 245 CDD bHLH_AtAIG1_like 67 143 - -
Lal8g0897 245 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
Lal8g0897 245 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 28 243 - -
Lal8g0897 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 130 IPR036638 GO:0046983
Lal8g0897 245 Gene3D - 66 132 IPR036638 GO:0046983
Lal8g0897 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Lal8g0897 245 PANTHER TRANSCRIPTION FACTOR BHLH30 28 243 IPR045847 GO:0003700|GO:0006355
Lal8g0897 245 SMART finulus 78 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0897 Lal-Chr8 6589962 6591531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0897 34 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 62.927 2.08e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal8g0897 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0897 - K22484 gmx:100802566 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0897 8 6589962 6591531 Lal10g0608 10 13833644 13835615 LSH