Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0877 ATGTCTCTTGAAGACTCCCTAAGATCTCTTTCCCTTGATTACCTAAACCTTCTCATCAACGGCCAAGCTTTCAGTGACGTCACTTTCAGCGTAGAGGGGCGTCTGGTCCACGCGCACCGTTGCATCCTTGCAGCACGGAGCTTATTCTTCAGGAAATTCTTCTGTGGCGGTTCAGACCCATCTGCATCATCGGGACTCATCGACCAAACCGGGATCCGGGTCAACCCATCCGGTTCACCCCGGTCCAGTAACGGGGTCTTAGTCATACCTGTGAACTCAGTGGGATACGAAGTTTTCTTGCTCTTGCTTCAGTTTCTTTACAGCGGCCAAGTCTCTATCGTGCCTCAGAAACATGAAGCAAGGCCTAATTGCGGTGAGAGAGGTTGTTGGCACACGCATTGTTCCTCAGCCGTTGATCTTGCCCTTGATACCCTCGCTGCCGCTAGATATTTTGGAGTTGAACAACTTGCATTGCTTACTCAGAAACAACTAGCTAGCATGGTAGAGAAAGCCTCAATTGAAGATGTAATGAAAGTGCTCCTAGCTTCAAGAAAACAAGACATGCAACAACTATGGACTACTTGTTCCCACCTTGTAGCCAAGTCTGGCCTTCCCCCTGAGGTCCTAGCCAAGCACCTCCCCATCGAAATTGTTGCTAAGATCGAAGAGCTTCGCCTCAAATCCTCAATAGCACGCCGCTCGATGATGCCCCACCACCATCACCATCACCACCACCACGACCTCAATGCAGCCGCAGACCTCGAGGACCAAAAAATCCGAAGAATGAGGAGGGCCTTGGACTCCTCCGATGTGGAACTCGTCAAGCTCATGGTAATGGGAGAAGGACTCAATCTAGATGAAGCATTGGCCTTACACTATGCCGTAGAGAATTGCAGCAGAGAAGTGGTGAAAGCCTTGCTCGAACTTGGGGCAGCCGATGTTAACTACCCCGCTGGCCCTGCGGGCAAAACCCCGCTACACATCGCGGCCGAAATGGTTTCGCCCGACATGGTGGCTGTATTGCTCGACCACCATGCCGACCCTAATGTCCGAACTGTGGACAATGTCACACCCTTGGACATACTCAGAACCCTAACCTCTGATTTCCTCTTCAAAGGTGCTATACCTGGATTAACACACATAGAACCAAACAAGCTAAGATTGTGCTTGGAACTTGTTCAATCCGCAGCTTTAGTATTATCAAGGGAAGAAGGAAATGCAAACAATAACGCTCCTTCTTCAACAACAACAACATTGCCTATGTATCATCACCATCCTATGAATGATGATCATAATAGCAGTTCTAGCAGTGGCAACAATCACAACATTGCTAACCTCAACTTGGACTCCAGGTTGGTGTACCTTAACCTTGGTGCCACCGTTGGTTCGGGTCAGATGAGTGACGATCATGGTGGCCGCCACGGTGATCCAGCCATGTACCACCACTCTCATCATGACTATTAG 1464 0.4952 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGGSDPSASSGLIDQTGIRVNPSGSPRSSNGVLVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCSSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWTTCSHLVAKSGLPPEVLAKHLPIEIVAKIEELRLKSSIARRSMMPHHHHHHHHHDLNAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDNVTPLDILRTLTSDFLFKGAIPGLTHIEPNKLRLCLELVQSAALVLSREEGNANNNAPSSTTTTLPMYHHHPMNDDHNSSSSSGNNHNIANLNLDSRLVYLNLGATVGSGQMSDDHGGRHGDPAMYHHSHHDY 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0877 487 SUPERFAMILY POZ domain 8 166 IPR011333 -
Lal8g0877 487 CDD BTB_POZ_NPR_plant 8 168 - -
Lal8g0877 487 Pfam Ankyrin repeats (3 copies) 269 351 IPR002110 GO:0005515
Lal8g0877 487 MobiDBLite consensus disorder prediction 469 487 - -
Lal8g0877 487 ProSiteProfiles BTB domain profile. 25 115 IPR000210 GO:0005515
Lal8g0877 487 MobiDBLite consensus disorder prediction 404 422 - -
Lal8g0877 487 Gene3D Potassium Channel Kv1.1; Chain A 4 201 IPR011333 -
Lal8g0877 487 PANTHER REGULATORY PROTEIN NPR5 1 484 - -
Lal8g0877 487 Pfam Domain of unknown function (DUF3420) 203 263 IPR024228 -
Lal8g0877 487 ProSiteProfiles Ankyrin repeat region circular profile. 321 351 - -
Lal8g0877 487 Pfam BTB/POZ domain 16 117 IPR000210 GO:0005515
Lal8g0877 487 MobiDBLite consensus disorder prediction 404 442 - -
Lal8g0877 487 ProSiteProfiles Ankyrin repeat profile. 321 353 IPR002110 GO:0005515
Lal8g0877 487 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 484 IPR044284 GO:0099402
Lal8g0877 487 SUPERFAMILY Ankyrin repeat 280 364 IPR036770 -
Lal8g0877 487 MobiDBLite consensus disorder prediction 465 487 - -
Lal8g0877 487 SMART ANK_2a 321 350 IPR002110 GO:0005515
Lal8g0877 487 SMART ANK_2a 286 316 IPR002110 GO:0005515
Lal8g0877 487 SMART BTB_4 25 168 IPR000210 GO:0005515
Lal8g0877 487 Gene3D - 246 369 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0877 Lal-Chr8 6419377 6422563 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal8g0877 BTB 2e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0877 K14508 - zju:107433767 738.028