Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0872 ATGAAAGAAGAATCAACAGGACTAATCATTGGGATTTCAATAGGTGTGGTTATTGGAGTTGTTCTAGCAATTACTGCATTGTTCTGTCTTAGATATCATCGGAAGGTTTCGCAGATTGGTAATAGCAGTTCCCGGAGGGCTGTTACAATTCCTATTCGCGCAAATGGTGCTGATTCATGTACTATTCTATCAGACTCAACCTTAGGTCCAGAATCACCTGTGAAGTCAGGACGAAATGGCGTGTCCTTCTGGCTTGATGGATTTAAGAAGAGTAATGTGGTTTCGGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAGAAGGCGACATGTAACTTCACAACTCTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCAACTGGGGAGATTGTTGCAGTAAAAGTTCTAGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGGTTATGTTGCTTGGAAGGTTACATCATAGAAACTTGGTCAATTTGGTTGGATATTGTGCTGAAAAGGGGCAACATATGCTTATATATGTCTACATGAGTAAAGGAAGCTTGGCTTCTCACTTGTACAGTGAAGAGAATGGGGCACTAGGCTGGGATTTGAGGGTTCATATAGCTTTAGATGTAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCTCCTGTTATCCATAGAGATATCAAATCTTCCAATATTCTGTTGGACGAGTCGATGCGAGCCCGGGTTGCTGATTTTGGCCTTTCAAGAGAAGAAATGGTGGATAAACATGCATCTATTAGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACTAAGAAAAGTGATGTATATAGTTATGGTGTATTGCTCTTTGAACTTATAGCTGGCCGAAATCCTCAGCAAGGTCTTATGGAATACGTCGAACTTGCAGCAATGAACACTGAGGGAAAAGTTGGTTGGGAAGAAATTGTTGATTCTAGGCTCGAGGGAAAATGCGAGTTCGAAGAACTTAATGAAGTGGCTGCCCTTGCCTACAAATGTATCAACCGCGCCCCGAGAAAGCGCCCTTCGATGAGGGACATAGTACAAGTGTTGACAAGGATCCTTAAATCAAGACACCATAGGAATAATAATCATTACAAGTCCTTGTCAGCCACAGCAGATGAAGTTTCCTTTGATGTTGATCAGACAGAAAACAAGAATTATGTAACTGAACACATGAGACATGAATCTATGGATAGTGCAGCTGACATGGATGATTTGTAG 1293 0.4161 MKEESTGLIIGISIGVVIGVVLAITALFCLRYHRKVSQIGNSSSRRAVTIPIRANGADSCTILSDSTLGPESPVKSGRNGVSFWLDGFKKSNVVSASGIPEYSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGEIVAVKVLATNSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLIYVYMSKGSLASHLYSEENGALGWDLRVHIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDESMRARVADFGLSREEMVDKHASIRGTFGYLDPEYISSGTFTKKSDVYSYGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKCEFEELNEVAALAYKCINRAPRKRPSMRDIVQVLTRILKSRHHRNNNHYKSLSATADEVSFDVDQTENKNYVTEHMRHESMDSAADMDDL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0872 430 Gene3D Transferase(Phosphotransferase) domain 1 188 402 - -
Lal8g0872 430 SUPERFAMILY Protein kinase-like (PK-like) 100 396 IPR011009 -
Lal8g0872 430 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 5 404 - -
Lal8g0872 430 CDD STKc_IRAK 118 377 - -
Lal8g0872 430 SMART serkin_6 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal8g0872 430 Pfam Protein tyrosine and serine/threonine kinase 114 374 IPR001245 GO:0004672|GO:0006468
Lal8g0872 430 Gene3D Phosphorylase Kinase; domain 1 86 187 - -
Lal8g0872 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Lal8g0872 430 PANTHER OS01G0253100 PROTEIN 5 404 IPR045271 GO:0004714|GO:0006468
Lal8g0872 430 ProSiteProfiles Protein kinase domain profile. 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0872 Lal-Chr8 6329657 6334066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0872 29 374 Glycoside Hydrolase AT3G07070 40.000 7.92e-74 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Lal8g0872 PK_Tyr_Ser-Thr 4.6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0872 - - gmx:100799586 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0639 10 14229786 14235422 Lal8g0872 8 6329657 6334066 LSH
Lal8g0872 8 6329657 6334066 Lal2g0538 2 3239765 3244714 PCT
Lal8g0872 8 6329657 6334066 Lal9g0474 9 3147326 3151561 PCT
Lal2g0538 2 3239765 3244714 Lal8g0872 8 6329657 6334066 PCT
Lal9g0474 9 3147326 3151561 Lal8g0872 8 6329657 6334066 PCT