Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0866 ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTATGGATTGATCGACGATTCTACCTTCACTGTCCCTCCTTCCGTTTTCACTTGGCCCCCAAATCCTTCACCTAATCTCGACGTTGAACTTGATGGCTCACTTGGTGGTTCTGATGGTCTCAAAGAGCCTGGTTCGAAGAAGAGGGGTAGATCTGATGCATGTGCTGGTTCTAGCTCTAAGGCTTGTCGGGAGAAGTTGCGGAGGGATAGGCTCAATGACAAGTTTGTTGAATTAAGCTCCATCTTGGAGCCTGGTAGGCCTGCCAAAACAGACAAGTCTGCTATTCTGATTGATGCTGTCCGAATGGTTACACAGTTGCGGGGTGAAGCCCAAAAGTTGAAAGACTCAAATATGAGCCTTCAAGAGAAGATTACAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTCAAGGCAGAAAAAGAGAAATTGGAGCAGCAGGTGAAGTCTATGAATGCACAACCTGGTTTCATGCATCATACCCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAAGCCAAGCTCCTGGCAACAAGTTGGTGCCATTTATGGGTTATCCAGGAGTTGCCATGTGGCAATTTATGCCACCGGCTGCCGTGGATACTTCACAGGATCATGTCCTCCGCCCACCAGTTGCCTAA 690 0.4783 MVSPENTNWLFDYGLIDDSTFTVPPSVFTWPPNPSPNLDVELDGSLGGSDGLKEPGSKKRGRSDACAGSSSKACREKLRRDRLNDKFVELSSILEPGRPAKTDKSAILIDAVRMVTQLRGEAQKLKDSNMSLQEKITELKAEKNELRDEKQRLKAEKEKLEQQVKSMNAQPGFMHHTPPAIPAAFAPQSQAPGNKLVPFMGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0866 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 139 IPR036638 GO:0046983
Lal8g0866 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 118 IPR011598 GO:0046983
Lal8g0866 229 CDD bHLH_AtILR3_like 72 147 - -
Lal8g0866 229 SMART finulus 73 124 IPR011598 GO:0046983
Lal8g0866 229 Gene3D arf6 gtpase in complex with a specific effector, jip4 117 170 - -
Lal8g0866 229 Gene3D - 58 116 IPR036638 GO:0046983
Lal8g0866 229 Coils Coil 115 170 - -
Lal8g0866 229 MobiDBLite consensus disorder prediction 32 71 - -
Lal8g0866 229 CDD bZIP 133 165 - -
Lal8g0866 229 Pfam Helix-loop-helix DNA-binding domain 71 118 IPR011598 GO:0046983
Lal8g0866 229 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 229 - -
Lal8g0866 229 PANTHER BHLH TRANSCRIPTION FACTOR 1 229 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0866 Lal-Chr8 6292156 6294893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0866 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.936 3.67e-109 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal8g0866 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0866 - - ccaj:109815088 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0866 8 6292156 6294893 Lal8g0866 8 6292156 6294893 ECH
Lal8g0866 8 6292156 6294893 Lal1g0537 1 3452330 3455207 PCT
Lal8g0866 8 6292156 6294893 Lal9g0470 9 3121585 3124293 PCT
Lal1g0537 1 3452330 3455207 Lal8g0866 8 6292156 6294893 PCT
Lal9g0470 9 3121585 3124293 Lal8g0866 8 6292156 6294893 PCT