Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0839 ATGGAGAAAAGTTTGGTGGTAGATGAAAATATGTCCAATTTGACATCTGCATCAAGTGAAATAAGTGCTTCTTCTGGAGCCAAGAGTAACACAGGCTCTCTCTACCCTCAATACTCCTCTACTTCAACACATCAAGAACCAATACTCAAAAAGAAGAGAAATCTTCCCGGCCACCCAGACCCTGAGGCTGAAGTGATAGCCTTGAGTCCCAAGTCTCTCATTGCAACAAACCGGTTTATATGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCATAAAAGAGGGCATAATTTGCCATGGAAGCTAAAACAAAGAAATAGCAAAGAACCATTGAAAAAGAAAGCATATGTGTGTCCAGAACCAACTTGTGTTCACCATGACCCATCAAGAGCCCTTGGAGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAACATGGAGAGAAGAACTGGAAGTGTGAGAAGTGTTCTAAGCGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAATTTGTGGCACCAGAGAGTATAAATGTGATTGTGGAACCCTCTTCTCTAGGAGAGACAGTTTTATTACTCACAGAGCCTTCTGTGATGCTTTAGCACAGGAGAGTGCTATTGCAAATAATGTCACAACAATGAACCCTCTTATGTCCTCTCACACTCAACTTTACAACCATAGCTTCCAAGAACTATCACTAGTTAAAAGAGAACAACACTTCAATAATTTAAGACCAGAAATTCCACATTGGTTGGGAGGAGAAGGTTTTCATGGACAAACTTCTATAGATTTCTCTTCAGCACCATTACTCTCTACACATTATGAAAACCCTAACCCTACAACTTTTCTTCCTCCTTTCCAATCCAATATTGCAGCTTCTTCTTCTTCTTCTTCTCCTCACATGTCTGCCACTGCTTTGTTGCAAAAGGCATCACAAATGGGTGCAACAGTAAGCAAAACTGCACCTTTTACAGCAACTCTTAGACCACACTTATTGCAGCAGCAGGGTCACGTGCCTGAATGTACAACAATAACAGGTTATAATAGCTCCTCTTCTGTGCCTTCATCTTCATCTCTTTCTGGCTCAATGGTTATTATGCCTTCACGTGAAGAGATAAGGACTGTTTTCTCTTATGGGAATAAAGCTGCAATTAACTCTTCTGCCAATACTATAGGAACCGATCAAGAATCTTCATTTTTCCATGATATGATGGGTAGTGGTGGTGGTAATAGTGGTACTGTTCATAATGCTAGTGGGTTTGAGAGCTCATCATTCGAGGAAGCTATGAGAGGAATGTTTAATAATCCATCAAGAGATGATGATAAAAACTTTCAGGAACTTATTTCAAAATCAGCACAATCCCAGTTTGGTAATAAAAGCAACAAGGGTGGTAATGATGAAATAACTAGAGATTTTCTAGGTCTTGGAGCATTTTCTCAAAGAGGATTCTTCAATATATCTGGGCTTGATCATTTGGATTCTTCATCATATGGGAAGCAAAATCAAAATCAAGCACCTTGGCAAGGCTAA 1551 0.3985 MEKSLVVDENMSNLTSASSEISASSGAKSNTGSLYPQYSSTSTHQEPILKKKRNLPGHPDPEAEVIALSPKSLIATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRNSKEPLKKKAYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKNWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESAIANNVTTMNPLMSSHTQLYNHSFQELSLVKREQHFNNLRPEIPHWLGGEGFHGQTSIDFSSAPLLSTHYENPNPTTFLPPFQSNIAASSSSSSPHMSATALLQKASQMGATVSKTAPFTATLRPHLLQQQGHVPECTTITGYNSSSSVPSSSSLSGSMVIMPSREEIRTVFSYGNKAAINSSANTIGTDQESSFFHDMMGSGGGNSGTVHNASGFESSSFEEAMRGMFNNPSRDDDKNFQELISKSAQSQFGNKSNKGGNDEITRDFLGLGAFSQRGFFNISGLDHLDSSSYGKQNQNQAPWQG 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0839 516 SMART c2h2final6 121 151 IPR013087 -
Lal8g0839 516 SMART c2h2final6 79 101 IPR013087 -
Lal8g0839 516 SMART c2h2final6 156 176 IPR013087 -
Lal8g0839 516 MobiDBLite consensus disorder prediction 18 45 - -
Lal8g0839 516 Gene3D Classic Zinc Finger 60 128 - -
Lal8g0839 516 MobiDBLite consensus disorder prediction 18 46 - -
Lal8g0839 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 491 - -
Lal8g0839 516 Gene3D Classic Zinc Finger 134 214 - -
Lal8g0839 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Lal8g0839 516 SUPERFAMILY beta-beta-alpha zinc fingers 78 176 IPR036236 -
Lal8g0839 516 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Lal8g0839 516 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 13 491 - -
Lal8g0839 516 Pfam Zinc-finger double-stranded RNA-binding 79 101 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0839 Lal-Chr8 6098169 6102404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0839 7 327 IDZ Gene Family AT1G55110 58.261 5.59e-120 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal8g0839 zf-C2H2_jaz 5.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0839 K25870 - vvi:100257789 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0839 8 6098169 6102404 Lal8g0839 8 6098169 6102404 ECH
Lal8g0839 8 6098169 6102404 Lal25g0628 25 4822830 4827381 LSH