Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0836 ATGGGTGGTTCAGGAAAATGGGTTAAAGCATTAATCGGTTTTAAGAAACCCGACAAGGACGAAAACATAAAGAGTAAGAAATGGAGGCTATGGAGAAGTTCTTCAGGAGATAATAACAAAGCAGCATCAACAGTAGGTTCTGAAGGATATGATTCACCAAAAAATGTAGTAACTGATGCTTTTAATGCTGCAGTTGCTACTGTTGTTCGAGCTCAACCTAAGGATTTTAAACTTGTTAGACAAGAATGGGCTGCTACAAGAATTCAAACTGTTTTTCGTGCCTTCTTGGCGAGAAGGGCATTGAAGGCATTGAAGGGAGTTGTGAAGCTTCAGGCTCTTGTTCGAGGTCGACAGGTGAGGAAGCAGGCTGCAGTGACATTGAGATGCATGCAGGCCCTAGTTCGTGTTCAAGCACGAGTAAGAGCTCGTCGTGTGCGCATGTCCGTAGAGGGGCAAGCAGTGCAGGAAATGCTCAATCAAAGGCGCACCAAGGCTGATCTCTTGAAAGAAGCCGAGGAAGGGTGGTGTGATAGCAAAGGAACATTGAAAGATGTTAAAACAAAATTACAGATGAGGCAAGAAGGAGCTTTCAAGAGGGAGAGAGCAATTGCATACTCTCTAGGTCACAAGCAATGGAGATCAACCCCCATCTCTAATTCAAGACCAAACACCTCACTTTCGACACTGAATAAGTATGAGATCGACAAGGTTAACGGGGGATGGAGTTGGTTAGAACGTTGGATGGCGGCTAAGCCTTGGGAGACTAGATTAATGGAACAAGCTCATGCTGATGCCTCAGTTAAAACCCCTCCACCAGCAAAGAAAAGTGTGCTGAAGTCCTCAAATTCAAAAAAATCAGAACCATGCTTAGTCAAAGTCCGAAAGAACAATGTCACTACAAGGATTTCTGCTAGACCTCCACATATTGGGCAAGCTACTCGTTTGTCCTCGAGCCCAAGTTCCGAGTTTCAGTATGATGAGAGCTCTGCTTCATCTTCAATTTGCACATCCATAACACCAACATCTGGGAATGCTGCTTGTGAAAACAGGATAGAGGATAGTAGTAACACTAAGCCAAGTTACATGAACCTGACTGAATCAACTAAGGCGAAGAAAAAAACGTGTAATCATCAATACAATAGAACTCAAAGGCAGCAATCCATGGATGAGTTTCAGTTTCTCAAAAGGACAGCTGTTTTCTCCAATGGTGATTCCAAAATCAGTGCTGGTTCTGATCCTTCAATCAACTTTTCTAGGCCACTTTATCTACCGAACTACTTGGATAAGAGCTCAGTGAAGCTACACTGA 1308 0.4343 MGGSGKWVKALIGFKKPDKDENIKSKKWRLWRSSSGDNNKAASTVGSEGYDSPKNVVTDAFNAAVATVVRAQPKDFKLVRQEWAATRIQTVFRAFLARRALKALKGVVKLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQEMLNQRRTKADLLKEAEEGWCDSKGTLKDVKTKLQMRQEGAFKRERAIAYSLGHKQWRSTPISNSRPNTSLSTLNKYEIDKVNGGWSWLERWMAAKPWETRLMEQAHADASVKTPPPAKKSVLKSSNSKKSEPCLVKVRKNNVTTRISARPPHIGQATRLSSSPSSEFQYDESSASSSICTSITPTSGNAACENRIEDSSNTKPSYMNLTESTKAKKKTCNHQYNRTQRQQSMDEFQFLKRTAVFSNGDSKISAGSDPSINFSRPLYLPNYLDKSSVKLH 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0836 435 Pfam IQ calmodulin-binding motif 83 102 IPR000048 GO:0005515
Lal8g0836 435 Pfam IQ calmodulin-binding motif 105 122 IPR000048 GO:0005515
Lal8g0836 435 MobiDBLite consensus disorder prediction 296 362 - -
Lal8g0836 435 MobiDBLite consensus disorder prediction 262 362 - -
Lal8g0836 435 PANTHER IQ-DOMAIN 5-RELATED 1 434 - -
Lal8g0836 435 SMART iq_5 80 102 IPR000048 GO:0005515
Lal8g0836 435 SMART iq_5 103 124 IPR000048 GO:0005515
Lal8g0836 435 Gene3D - 79 132 - -
Lal8g0836 435 ProSiteProfiles IQ motif profile. 105 132 IPR000048 GO:0005515
Lal8g0836 435 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 434 - -
Lal8g0836 435 ProSiteProfiles IQ motif profile. 81 109 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0836 Lal-Chr8 6060496 6063456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0836 1 429 IQD Protein Family AT2G26180 60.364 1.35e-146 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0836 - - gmx:100787102 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0836 8 6060496 6063456 Lal8g0836 8 6060496 6063456 ECH
Lal8g0836 8 6060496 6063456 Lal4g0166 4 1043279 1046007 PCT
Lal4g0166 4 1043279 1046007 Lal8g0836 8 6060496 6063456 PCT