Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0820 ATGGGAAGAACACCTTGTTGTGACAAAAATGGACTCAAAAAAGGTCCATGGACACCAGAGGAAGACCTCAAACTCATTAACTACATTCAAACTCATGGACCAGGAAATTGGCGTGCTCTCCCAAAAAATGCTGGCTTACTAAGATGTGGCAAGAGTTGTCGCCTTAGATGGACAAATTACCTGAGACCGGACATCAAACGAGGAAGGTTCTCTTTTGAGGAAGAAGAGGCTATTATTCAGCTGCACAGTGTCATGGGAAACAAGTGGTCAGCTATAGCAGCTAGGTTACCCGGAAGAACGGACAACGAAATAAAGAACTATTGGAACACCCACATAAGGAAGAGACTCCTACATATGGGGATTGATCCAGTTACTCATTCTCCACGCCTTGATCTTCTTGACATGTCCTCAGTTCTCAGGTTAGCCTTATGCAACCCATCTCTTCTGATGAATATGCAAGGCTTATTGAATAGTAGTACCCAAGCACCATTGGTGAACCCAGAGTTGTTAAAGCTAGCTACCATTGCAACTCTATTATCATTGAAGATTGAGAATCCAGACTCGGTTTCACAAAATATACATCAACAAATCAATGATGGGAATTTTCAAGTACAACAAAACCAAGGTACCCTACCACAGGAGTTTATGAACCAGTTTGATCATACACTAAATCAAAGCACCAATGTGAACGGCTTAAGTGGTAACTTGGTGAACATGAGTAACTCAAGTTCCTTAGGGAACTCGATTTCTCAACAAAACCAAGTTGGTTTTCTAGAAAGCTCAGAATTTGGACAGTTTCTAAATAATACAAACCAAAACATAAGATATGAATCAGTTTTGTCTAAGCCTTTATCGACCCCATCTTCATTGAATTCATCATATGTGAATAGCAGCACTGAGGAAGAGAAGGAAACATATTGCAGCGACATATTCAAGTTCGAAATTCCAGAGAGTCTGGACATTAGTGACTTT 972 0.4043 MGRTPCCDKNGLKKGPWTPEEDLKLINYIQTHGPGNWRALPKNAGLLRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHSVMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLHMGIDPVTHSPRLDLLDMSSVLRLALCNPSLLMNMQGLLNSSTQAPLVNPELLKLATIATLLSLKIENPDSVSQNIHQQINDGNFQVQQNQGTLPQEFMNQFDHTLNQSTNVNGLSGNLVNMSNSSSLGNSISQQNQVGFLESSEFGQFLNNTNQNIRYESVLSKPLSTPSSLNSSYVNSSTEEEKETYCSDIFKFEIPESLDISDF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0820 324 SMART sant 66 114 IPR001005 -
Lal8g0820 324 SMART sant 13 63 IPR001005 -
Lal8g0820 324 CDD SANT 69 112 IPR001005 -
Lal8g0820 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal8g0820 324 CDD SANT 16 61 IPR001005 -
Lal8g0820 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal8g0820 324 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal8g0820 324 Gene3D - 13 66 - -
Lal8g0820 324 Gene3D - 69 116 - -
Lal8g0820 324 PANTHER TRANSCRIPTION FACTOR MYB41 1 320 - -
Lal8g0820 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal8g0820 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal8g0820 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 320 - -
Lal8g0820 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal8g0820 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0820 Lal-Chr8 5879981 5881774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0820 1 324 MYB Transcription Factor Family AT4G21440 52.975 7.90e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal8g0820 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0820 K09422 - gmx:102668351 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0820 8 5879981 5881774 Lal8g0820 8 5879981 5881774 ECH
Lal8g0820 8 5879981 5881774 Lal1g0482 1 3033541 3035294 PCT
Lal8g0820 8 5879981 5881774 Lal2g0441 2 2670367 2671728 PCT
Lal1g0482 1 3033541 3035294 Lal8g0820 8 5879981 5881774 PCT
Lal2g0441 2 2670367 2671728 Lal8g0820 8 5879981 5881774 PCT