Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0792 ATGCCTAAGCATAGATACCTCTTCTTCTACCCAAAAGGACAGATGCACATGCAGGATCATTTCACCAAAATTCTAAACAAACCTCTGCCACCGTCAACCTTAACTGTCGGTGACGCTTCTTCAACTGTTTTTTCTCGTGCTCCGAGCTTGTCGGAGAATACATTAGTGGCGGCGCGTCGAACAATTTTCGTCCTCACTCACAATGCAGCTCCTCCGTGTATCCGCAGTTATGCGCAAAGGGACTGCCTCACCATCATGTCATCGACTCACATTGGTATCCCGGCACCGCCACATGGTACGGCGAACCAGAAGGAGATGGTAGCACAGGTCACTACAACTGGAATCTTAGAGTTGCATCTACAATCTGAACCACTCCGGCATATGTTTGTGATTGTGAACGTGGGAAATGATAATGAAGGAGGAGCATGTGGATATGGAACACTGGTGGATGTGAAGCCATTGAGGGCAAGGGTAGGTGCGGTGGGACCGTTTCTGTTCAAGGGCGGAGAAGGGTGCGGGGCTTGCTATAAAGTGAAGTGTCTGGACAAGAGCGTATGCTCCACGCGCGCCGTGACAGTTATAATAACGGATGAGTGCCCTGGGTGCCCTTCTGACCGAACCCACTTCGACCTTAGTGGCGCCGTCTTTGGGCGAATGGCTGTTGCTGGTGAAAACGGTCAGCTCAGGAATCGAGGTGAAATCTCAGTCATTTACCGAAGAACTCCATGCACATATCCTGGCTATAATGTTGCCTTCCATGTTAATGAAGGTTCCACACCTTTTTGGCTGTCACTTCTGGTAGAATTTGAGGATGGAGATGGAGACATTGGGTCCATGCATATACAAGAAGCAGGGTCTAGTGAGTGGGTGCAAATGAATCATGTATGGGGTGCAAGCTGGTGCATTACCAGAGGACCTTTGAAAGGACCTTTCTCTGTGAAACTAAGCACTTCTACTGGGAAAACACTCACTGCTAGAGATGTTATTCCAAGAAATTGGTCTCCAAAATCCACTTATACCTCTCGCTTAAATTTCTTCCCTTAG 1044 0.4837 MPKHRYLFFYPKGQMHMQDHFTKILNKPLPPSTLTVGDASSTVFSRAPSLSENTLVAARRTIFVLTHNAAPPCIRSYAQRDCLTIMSSTHIGIPAPPHGTANQKEMVAQVTTTGILELHLQSEPLRHMFVIVNVGNDNEGGACGYGTLVDVKPLRARVGAVGPFLFKGGEGCGACYKVKCLDKSVCSTRAVTVIITDECPGCPSDRTHFDLSGAVFGRMAVAGENGQLRNRGEISVIYRRTPCTYPGYNVAFHVNEGSTPFWLSLLVEFEDGDGDIGSMHIQEAGSSEWVQMNHVWGASWCITRGPLKGPFSVKLSTSTGKTLTARDVIPRNWSPKSTYTSRLNFFP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0792 347 PRINTS Major pollen allergen Lol pI signature 198 213 IPR005795 GO:0005576|GO:0019953
Lal8g0792 347 PRINTS Major pollen allergen Lol pI signature 220 235 IPR005795 GO:0005576|GO:0019953
Lal8g0792 347 PRINTS Major pollen allergen Lol pI signature 252 267 IPR005795 GO:0005576|GO:0019953
Lal8g0792 347 PRINTS Major pollen allergen Lol pI signature 268 283 IPR005795 GO:0005576|GO:0019953
Lal8g0792 347 PRINTS Major pollen allergen Lol pI signature 297 314 IPR005795 GO:0005576|GO:0019953
Lal8g0792 347 PRINTS Major pollen allergen Lol pI signature 317 334 IPR005795 GO:0005576|GO:0019953
Lal8g0792 347 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 140 248 IPR007112 -
Lal8g0792 347 SUPERFAMILY PHL pollen allergen 249 341 IPR036749 -
Lal8g0792 347 Pfam Expansin C-terminal domain 250 330 IPR007117 -
Lal8g0792 347 PRINTS Expansin/Lol pI family signature 139 157 IPR007118 GO:0005576
Lal8g0792 347 PRINTS Expansin/Lol pI family signature 162 180 IPR007118 GO:0005576
Lal8g0792 347 PRINTS Expansin/Lol pI family signature 231 247 IPR007118 GO:0005576
Lal8g0792 347 PRINTS Expansin/Lol pI family signature 289 303 IPR007118 GO:0005576
Lal8g0792 347 PRINTS Expansin/Lol pI family signature 327 341 IPR007118 GO:0005576
Lal8g0792 347 Pfam Lytic transglycolase 164 235 IPR009009 -
Lal8g0792 347 Gene3D - 244 342 IPR036749 -
Lal8g0792 347 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 261 341 IPR007117 -
Lal8g0792 347 SMART dpbb_1 158 238 IPR007112 -
Lal8g0792 347 Gene3D - 127 243 IPR036908 -
Lal8g0792 347 SUPERFAMILY Barwin-like endoglucanases 135 247 IPR036908 -
Lal8g0792 347 PANTHER EXPANSIN-LIKE PROTEIN B1 135 347 - -
Lal8g0792 347 PANTHER EXPANSIN-B3 135 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0792 Lal-Chr8 5701151 5704768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0792 135 283 Expansin Gene Family AT4G28250 77.852 1.61e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0792 K20628 - gmx:100780112 394.815