Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0791 ATGCAACGCCACCGTGTTTTTGTTGCATTTTTTAGCCTATGTTTTTGCTCATCGTTGAGACTTATGCTAGTATGTGCCAAAGACGAAGAACCCCTCGACAAAGGTTGGTATCGGGGCACCGCAACCTGGTACGGCGAACCTGAAGGAAGCGGTAGCACCGGAGGGGCATGTGGGTATGGTCCAATGGTGAACGAGAAGCCATTCATGTATAGAGTGAGTGCAGCAGGACCAAAGTTATACAAGAAAGGGAAAGGGTGTGGTGCATGTTATAAGGTAAAGTGCAGGGACAAGGAAATGTGTGCTAAGAGAGCTGTGACTGTTATAATTACAGATGAGTGCCCTGGTTGTCCACCCGTTCACTTTGACCTAAGTGGTGCTGCCTTTGGCCGCATGGCTGTAGAAGGCAAAAATGGTCACCTTAGGAACAAAGGTCGACTCCCAATAATTTTTAAGAGAGTTTCATGCCAATATCCTGGGAAAGAAATTTCTTTCCATGTTAATGATGGTTCGTCACCTCATTTTCTATCAGTTTTAGTGAAGTTTGTAAGAGGAGATGGCGAGATCAGCTCTATGTATCTACAACAAGGAGGTTCAAAAGAGTGGATGCCAATGACTAATCTATGGGGTGCAAATTGGGCAATCACTAAGGGACCTTTAAAAGGACCTTACTCACTGAGAATAATAACCAACACAGGGAAAAGTTTCACTTCCAAAAATGTTATTCCAAACAACTTCTCTCCAAAAACTACCTATACTGCTAGCAAACGTGCTCCCAAGTGA 780 0.441 MQRHRVFVAFFSLCFCSSLRLMLVCAKDEEPLDKGWYRGTATWYGEPEGSGSTGGACGYGPMVNEKPFMYRVSAAGPKLYKKGKGCGACYKVKCRDKEMCAKRAVTVIITDECPGCPPVHFDLSGAAFGRMAVEGKNGHLRNKGRLPIIFKRVSCQYPGKEISFHVNDGSSPHFLSVLVKFVRGDGEISSMYLQQGGSKEWMPMTNLWGANWAITKGPLKGPYSLRIITNTGKSFTSKNVIPNNFSPKTTYTASKRAPK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0791 259 Gene3D - 23 155 IPR036908 -
Lal8g0791 259 PANTHER EXPANSIN-LIKE PROTEIN B1 13 253 - -
Lal8g0791 259 PRINTS Major pollen allergen Lol pI signature 74 85 IPR005795 GO:0005576|GO:0019953
Lal8g0791 259 PRINTS Major pollen allergen Lol pI signature 110 125 IPR005795 GO:0005576|GO:0019953
Lal8g0791 259 PRINTS Major pollen allergen Lol pI signature 132 147 IPR005795 GO:0005576|GO:0019953
Lal8g0791 259 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Lal8g0791 259 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Lal8g0791 259 PRINTS Major pollen allergen Lol pI signature 209 226 IPR005795 GO:0005576|GO:0019953
Lal8g0791 259 PRINTS Major pollen allergen Lol pI signature 229 246 IPR005795 GO:0005576|GO:0019953
Lal8g0791 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 160 IPR007112 -
Lal8g0791 259 SUPERFAMILY Barwin-like endoglucanases 33 159 IPR036908 -
Lal8g0791 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Lal8g0791 259 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Lal8g0791 259 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Lal8g0791 259 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Lal8g0791 259 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Lal8g0791 259 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Lal8g0791 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Lal8g0791 259 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Lal8g0791 259 Gene3D - 156 253 IPR036749 -
Lal8g0791 259 Pfam Lytic transglycolase 74 138 IPR009009 -
Lal8g0791 259 Pfam Expansin C-terminal domain 162 242 IPR007117 -
Lal8g0791 259 SMART dpbb_1 72 150 IPR007112 -
Lal8g0791 259 PANTHER EXPANSIN-B3 13 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0791 Lal-Chr8 5693678 5696449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0791 33 251 Expansin Gene Family AT1G65680 50.893 3.61e-78 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0791 K20628 - gmx:100780112 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0791 8 5693678 5696449 Lal8g0791 8 5693678 5696449 ECH