Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0770 ATGCCTGCCCAAAAGCACTCATTCCCTGACTCTCTTGACGATGGGGACACTTCTTCACAGCTCCCTCACCACCACCTCAAGCAGCAACAACAACAACAACCTAAGCAGCACGAATATGAGGACGAGGAAAACGATGAGCACGAGGATGAGGAAGAAGGAGAACAAGGTGATGCAGAAGAAGAAAAAGATGAAGATGAAGACGGTGATGAAGCTGAAGATGACGACGACGAAGAAGAAGAAGCAGGTCAACACCAGAACGATAATAAGGATGAAAAATCACAGGATTCTGATGAAACCCCATCTTCTGGTTCTGAAGATAAATCCGAGTTTGTGTATGTAGAACTTCAGGAAGTTCGTAAAGATGTCCAGTGTCCAATTTGCCTTGGTATCATCAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGATTAGGGAACAATGAATGTCCTGCCTGCCGCACACATTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCGAACTACGATGCCCTTATTGCCGCTTTATATCCAGACATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTAGTTCAACGACAATCCGAAGCAATGGGAAAGAGACGTAAAGATACACCAGGTACATCTGTGACAAGATCACAGCGCAATCAACGAAATGTTCATTCTAGGAGACAGAATCAAATGAATGATACTCAAGGGTCTGAAGATAATGACGAGGACAATGACAATAATGAAAAGGACTCATCTTCTGCTGATGAGCGGTGTACAGAATCTAGGCAGAGTAAGCGAAAGAGATGGACCAGAGTTCGCCCTTCTCAGCCTTCATCATCGAGGGCGAGCCCTGATGGTGGATGCATAGAAAGTGATATGGATATAAGTAGAGAAAATCAAGGAACTTCAAGGCAGGTGACAAGACCTCGAAAGCTTACTTGGGGAAGGGGTGGTTTTAGAAGTCACACACGGTATGGCAGTGGTGGTGGTAGCAATAGCAAAAGTTCCCGCAATGGTCGAGTGCCTAAGTTGGTAGATCATCTCCGAAACTTGGATGAGAACACTGATGAGTTTGAAATCCATGTCATGCTTTTTTCTCTGGACAAACAAAGTACACCAATTTTGCAGCAGCCACACCTTAGCTGTCGACCGAATTTGTATGTCAAGCACCTTTGTGAATATGTTGCGTGTCAAACACCTTTGGCAGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCAGCAGTTCAAAGTCTGACAACTCAGCTGATGACAGTCCAGCCTTGATATGTGATAAACTAACGACATTGGTTATCGATCCATGCAAAGATGAACTGGAAATTCTGAAAGAACATGAATCCTTGTCTGGGATTACATCCAAATGCATATCAAAGATGGAGCATTTGATTCTTGCATACAGGCGCAAGGAGGCGCAATAA 1515 0.4396 MPAQKHSFPDSLDDGDTSSQLPHHHLKQQQQQQPKQHEYEDEENDEHEDEEEGEQGDAEEEKDEDEDGDEAEDDDDEEEEAGQHQNDNKDEKSQDSDETPSSGSEDKSEFVYVELQEVRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEAMGKRRKDTPGTSVTRSQRNQRNVHSRRQNQMNDTQGSEDNDEDNDNNEKDSSSADERCTESRQSKRKRWTRVRPSQPSSSRASPDGGCIESDMDISRENQGTSRQVTRPRKLTWGRGGFRSHTRYGSGGGSNSKSSRNGRVPKLVDHLRNLDENTDEFEIHVMLFSLDKQSTPILQQPHLSCRPNLYVKHLCEYVACQTPLAVEEVEILAVKGCSSSKSDNSADDSPALICDKLTTLVIDPCKDELEILKEHESLSGITSKCISKMEHLILAYRRKEAQ 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0770 504 MobiDBLite consensus disorder prediction 350 364 - -
Lal8g0770 504 MobiDBLite consensus disorder prediction 275 290 - -
Lal8g0770 504 MobiDBLite consensus disorder prediction 82 109 - -
Lal8g0770 504 Pfam Zinc finger, C3HC4 type (RING finger) 123 163 - -
Lal8g0770 504 MobiDBLite consensus disorder prediction 237 260 - -
Lal8g0770 504 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 502 - -
Lal8g0770 504 Coils Coil 44 64 - -
Lal8g0770 504 SUPERFAMILY RING/U-box 112 178 - -
Lal8g0770 504 PANTHER OS11G0578200 PROTEIN 1 502 IPR044592 -
Lal8g0770 504 MobiDBLite consensus disorder prediction 1 109 - -
Lal8g0770 504 SMART ring_2 124 163 IPR001841 -
Lal8g0770 504 CDD RING-HC_RING1_like 124 164 - -
Lal8g0770 504 ProSiteProfiles Zinc finger RING-type profile. 124 164 IPR001841 -
Lal8g0770 504 Coils Coil 190 221 - -
Lal8g0770 504 MobiDBLite consensus disorder prediction 201 366 - -
Lal8g0770 504 MobiDBLite consensus disorder prediction 320 334 - -
Lal8g0770 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 194 IPR013083 -
Lal8g0770 504 MobiDBLite consensus disorder prediction 42 81 - -
Lal8g0770 504 ProSitePatterns Zinc finger RING-type signature. 140 149 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0770 Lal-Chr8 5520788 5526936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0770 116 187 C3H Transcription Factor Family AT3G23060 36.000 2.87e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0770 K10695 - gmx:100776547 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0770 8 5520788 5526936 Lal8g0770 8 5520788 5526936 ECH
Lal10g0686 10 14631595 14638016 Lal8g0770 8 5520788 5526936 LSH