Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0768 ATGAGTAGTGTGTGCAGTGAGCAGCACAAGTTTCACTCTTCCTACCAACAACAACAACTTTCCCCAAAGAAAATCCTCAGAGACATTGATATCCCACCAAGGAAACTCCTCACCCGGCGAGCCACGGCCACCACATACGACGGTGGCGCTGACATGTTTTCTGACGACATCATTCAAAAGTTTCTCCCTTGCAACAAAGTAGATGATGAGGATGAGGATTCTGATGATCCCTACTCCTCTGACTACTTCCGGATGTACGAATTCAAGGTCCGTCGATGCACTCGCAGCCGTAGCCACGACTGGACGGACTGTCCATTCGCACATCCGGGGGAAAAGGCCCGCCGCCGTGACCCACGGCGGTATCACTACTCTGGCACAGTGTGCCCTGAATACCGCCGTGGAAGTTGCAGCCGTGGCGATAGCTGTGAATTCGCACACGGCGTCTTTGAATGCTGGCTGCACCCCGCAAGGTACAGAACCGAAGCATGCAAGGATGGAAAGAAGTGCAAAAGAAAAGTGTGTTTTTTTGCACATACCCCTCGCCAACTAAGAATATTGCCCATAAGTTCTCATCACAACAACACTTCTTCTAATGATAATATTTCATTATGCAAGAAGAACATTAACAACAAATTGTTCTTGAACCCTTCTTCGGGTTCAAACAACAATAACTGTTGTATGTTTTGCCACCATTGTGTTGGTGCTGCTAATTCTGCTTCTCCAACTTCCACGCTTTTCAACATGTCTCATTTCTCACCACCACTCTCACCGTTGTCCTCAACCAATTCTCCACCGTTTTCTCCTGTGAAACGCACCATTTCTAGGGTGAATACTAATAGCTACAAAGATGTGGTATGTGAGCTGATGAATTCAATGGAGGGTTTGAATTTTAGCGATGGTTCTCCTATTTCTGCTGCAAAAGCAAAAAACTTCGCATGGCTTGATATGTCTTTGAACAGTGATGATCAACAATTTCTTGTTTCACCTTCAGCTTCTTCATTTGGCTGGGAAGATCAGTTTGTTCTTTCACCTTCTACTCAGAACCCAACAAGATCCAACGTTGGGAAGTGTTCTAATTTTAGCAGCAAATTTTTCAGCAACGACAATAAGGTTGTTGATGCTGACATTAATAATGGATTGTCTTGTCCTAGCCCAGATCTCGAGTGGGTAAATGAACTGCTGATGTAG 1188 0.4529 MSSVCSEQHKFHSSYQQQQLSPKKILRDIDIPPRKLLTRRATATTYDGGADMFSDDIIQKFLPCNKVDDEDEDSDDPYSSDYFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGSCSRGDSCEFAHGVFECWLHPARYRTEACKDGKKCKRKVCFFAHTPRQLRILPISSHHNNTSSNDNISLCKKNINNKLFLNPSSGSNNNNCCMFCHHCVGAANSASPTSTLFNMSHFSPPLSPLSSTNSPPFSPVKRTISRVNTNSYKDVVCELMNSMEGLNFSDGSPISAAKAKNFAWLDMSLNSDDQQFLVSPSASSFGWEDQFVLSPSTQNPTRSNVGKCSNFSSKFFSNDNKVVDADINNGLSCPSPDLEWVNELLM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0768 395 Gene3D - 122 186 - -
Lal8g0768 395 SUPERFAMILY CCCH zinc finger 121 151 IPR036855 GO:0046872
Lal8g0768 395 SMART c3hfinal6 122 148 IPR000571 GO:0046872
Lal8g0768 395 SMART c3hfinal6 157 180 IPR000571 GO:0046872
Lal8g0768 395 PANTHER UNKEMPT FAMILY MEMBER 28 394 IPR045234 -
Lal8g0768 395 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 28 394 - -
Lal8g0768 395 ProSiteProfiles Zinc finger C3H1-type profile. 123 149 IPR000571 GO:0046872
Lal8g0768 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 147 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0768 Lal-Chr8 5515160 5516347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0768 75 184 C2H2 Transcription Factor Family AT5G07500 70.000 2.01e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal8g0768 zf-CCCH 3.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0768 K23047 - gmx:100787049 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0768 8 5515160 5516347 Lal8g0768 8 5515160 5516347 ECH